RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 KIAA0586Q9BVV6 1533 aa32.19■■■□□ 2.74
SYNE4-202ENST00000340477 EEA1Q15075 1411 aa32.14■■■□□ 2.74
SYNE4-202ENST00000340477 CHIC1Q5VXU3 224 aa32.13■■■□□ 2.73
SYNE4-202ENST00000340477 JPH4Q96JJ6 628 aa32.12■■■□□ 2.73
SYNE4-202ENST00000340477 PRG4Q92954 1404 aaPredicted RBP32.11■■■□□ 2.73
SYNE4-202ENST00000340477 ERCC6L2Q5T890 1561 aa32.11■■■□□ 2.73
SYNE4-202ENST00000340477 IQGAP2Q13576 1575 aa32.07■■■□□ 2.72
SYNE4-202ENST00000340477 PRXQ9BXM0 1461 aa32.04■■■□□ 2.72
SYNE4-202ENST00000340477 CSRNP3Q8WYN3 585 aa32.01■■■□□ 2.71
SYNE4-202ENST00000340477 CTTNBP2Q8WZ74 1663 aa32.01■■■□□ 2.71
SYNE4-202ENST00000340477 CARMIL2Q6F5E8 1435 aa31.92■■■□□ 2.7
SYNE4-202ENST00000340477 FAM9AQ8IZU1 332 aaPredicted RBP31.9■■■□□ 2.7
SYNE4-202ENST00000340477 UGGT2Q9NYU1 1516 aa31.85■■■□□ 2.69
SYNE4-202ENST00000340477 KIF21BO75037 1637 aa31.8■■■□□ 2.68
SYNE4-202ENST00000340477 TNIKQ9UKE5 1360 aa31.76■■■□□ 2.67
SYNE4-202ENST00000340477 KIAA0556O60303 1618 aa31.75■■■□□ 2.67
SYNE4-202ENST00000340477 DISP1Q96F81 1524 aa31.75■■■□□ 2.67
SYNE4-202ENST00000340477 GOLGA3Q08378 1498 aa31.74■■■□□ 2.67
SYNE4-202ENST00000340477 PTPRGP23470 1445 aa31.73■■■□□ 2.67
SYNE4-202ENST00000340477 TTBK1Q5TCY1 1321 aaPredicted RBP31.68■■■□□ 2.66
SYNE4-202ENST00000340477 TRHP20396 242 aaPredicted RBP31.64■■■□□ 2.66
SYNE4-202ENST00000340477 ADCY10Q96PN6 1610 aa31.64■■■□□ 2.65
SYNE4-202ENST00000340477 NPM1P06748 294 aaKnown RBP eCLIP31.62■■■□□ 2.65
SYNE4-202ENST00000340477 UACAQ9BZF9 1416 aa31.52■■■□□ 2.64
SYNE4-202ENST00000340477 SAMD9Q5K651 1589 aa31.51■■■□□ 2.64
SYNE4-202ENST00000340477 UBTFP17480 764 aaKnown RBP31.51■■■□□ 2.63
SYNE4-202ENST00000340477 UHRF1BP1LA0JNW5 1464 aa31.5■■■□□ 2.63
SYNE4-202ENST00000340477 ABCC2Q92887 1545 aa31.49■■■□□ 2.63
SYNE4-202ENST00000340477 EHMT2Q96KQ7 1210 aa31.49■■■□□ 2.63
SYNE4-202ENST00000340477 MAPKBP1O60336 1514 aa31.47■■■□□ 2.63
SYNE4-202ENST00000340477 RANGAP1P46060 587 aaPredicted RBP31.43■■■□□ 2.62
SYNE4-202ENST00000340477 EFCAB5A4FU69 1503 aa31.43■■■□□ 2.62
SYNE4-202ENST00000340477 P3H3Q8IVL6 736 aa31.4■■■□□ 2.62
SYNE4-202ENST00000340477 PLB1Q6P1J6 1458 aa31.37■■■□□ 2.61
SYNE4-202ENST00000340477 ABCA8O94911 1581 aa31.36■■■□□ 2.61
SYNE4-202ENST00000340477 KDM5BQ9UGL1 1544 aa31.34■■■□□ 2.61
SYNE4-202ENST00000340477 KIF13AQ9H1H9 1805 aa31.33■■■□□ 2.61
SYNE4-202ENST00000340477 ZCCHC11Q5TAX3 1644 aaKnown RBP31.32■■■□□ 2.6
SYNE4-202ENST00000340477 FHOD3Q2V2M9 1422 aa31.3■■■□□ 2.6
SYNE4-202ENST00000340477 ABCC10Q5T3U5 1492 aa31.29■■■□□ 2.6
SYNE4-202ENST00000340477 DIP2BQ9P265 1576 aa31.28■■■□□ 2.6
SYNE4-202ENST00000340477 ASXL2Q76L83 1435 aa31.25■■■□□ 2.59
SYNE4-202ENST00000340477 RAPGEF6Q8TEU7 1601 aa31.25■■■□□ 2.59
SYNE4-202ENST00000340477 FAM69CQ0P6D2 419 aa31.21■■■□□ 2.59
SYNE4-202ENST00000340477 ARHGAP35Q9NRY4 1499 aa31.15■■■□□ 2.58
SYNE4-202ENST00000340477 WDR7Q9Y4E6 1490 aa31.13■■■□□ 2.57
SYNE4-202ENST00000340477 FMN1Q68DA7 1419 aa31.12■■■□□ 2.57
SYNE4-202ENST00000340477 GLI2P10070 1586 aa31.09■■■□□ 2.57
SYNE4-202ENST00000340477 ARID3CA6NKF2 412 aa31.07■■■□□ 2.56
SYNE4-202ENST00000340477 EPRSP07814 1512 aaKnown RBP31.06■■■□□ 2.56
SYNE4-202ENST00000340477 ATP10BO94823 1461 aa31.06■■■□□ 2.56
SYNE4-202ENST00000340477 NUP153P49790 1475 aaKnown RBP31.06■■■□□ 2.56
SYNE4-202ENST00000340477 TSPOAP1O95153 1857 aa31.06■■■□□ 2.56
SYNE4-202ENST00000340477 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.03■■■□□ 2.56
SYNE4-202ENST00000340477 HNRNPUL2Q1KMD3 747 aaKnown RBP31.03■■■□□ 2.56
SYNE4-202ENST00000340477 HECW1Q76N89 1606 aa31.02■■■□□ 2.56
SYNE4-202ENST00000340477 CLIP1P30622 1438 aa31.01■■■□□ 2.55
SYNE4-202ENST00000340477 MAP3K4Q9Y6R4 1608 aa30.96■■■□□ 2.55
SYNE4-202ENST00000340477 KCNH8Q96L42 1107 aa30.93■■■□□ 2.54
SYNE4-202ENST00000340477 CFAP43Q8NDM7 1665 aa30.93■■■□□ 2.54
SYNE4-202ENST00000340477 ATP1B4Q9UN42 357 aaPredicted RBP30.92■■■□□ 2.54
SYNE4-202ENST00000340477 TEX14Q8IWB6 1497 aa30.88■■■□□ 2.53
SYNE4-202ENST00000340477 PPRC1Q5VV67 1664 aaKnown RBP30.87■■■□□ 2.53
SYNE4-202ENST00000340477 CEP162Q5TB80 1403 aa30.86■■■□□ 2.53
SYNE4-202ENST00000340477 CDK13Q14004 1512 aaKnown RBP30.86■■■□□ 2.53
SYNE4-202ENST00000340477 PCF11O94913 1555 aaKnown RBP30.85■■■□□ 2.53
SYNE4-202ENST00000340477 PLEKHD1A6NEE1 506 aa30.85■■■□□ 2.53
SYNE4-202ENST00000340477 KDM6BO15054 1643 aa30.83■■■□□ 2.53
SYNE4-202ENST00000340477 CASKIN1Q8WXD9 1431 aa30.82■■■□□ 2.52
SYNE4-202ENST00000340477 CD109Q6YHK3 1445 aa30.81■■■□□ 2.52
SYNE4-202ENST00000340477 ABCA9Q8IUA7 1624 aa30.8■■■□□ 2.52
SYNE4-202ENST00000340477 FYCO1Q9BQS8 1478 aa30.8■■■□□ 2.52
SYNE4-202ENST00000340477 CCDC18Q5T9S5 1454 aa30.78■■■□□ 2.52
SYNE4-202ENST00000340477 LOC105371045A0A1W2PR82 267 aa30.78■■■□□ 2.52
SYNE4-202ENST00000340477 CDK11AQ9UQ88 783 aaPredicted RBP30.78■■■□□ 2.52
SYNE4-202ENST00000340477 MAGI3Q5TCQ9 1506 aa30.76■■■□□ 2.51
SYNE4-202ENST00000340477 LRRIQ1Q96JM4 1722 aa30.75■■■□□ 2.51
SYNE4-202ENST00000340477 KIF14Q15058 1648 aa30.65■■■□□ 2.5
SYNE4-202ENST00000340477 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.63■■■□□ 2.49
SYNE4-202ENST00000340477 TROQ12816 1431 aaPredicted RBP30.63■■■□□ 2.49
SYNE4-202ENST00000340477 TTC37Q6PGP7 1564 aa30.62■■■□□ 2.49
SYNE4-202ENST00000340477 CFAP74Q9C0B2 1584 aa30.58■■■□□ 2.49
SYNE4-202ENST00000340477 PHLDB1Q86UU1 1377 aa30.56■■■□□ 2.48
SYNE4-202ENST00000340477 NEO1Q92859 1461 aa30.56■■■□□ 2.48
SYNE4-202ENST00000340477 MYO5CQ9NQX4 1742 aa30.54■■■□□ 2.48
SYNE4-202ENST00000340477 VPS8Q8N3P4 1428 aa30.5■■■□□ 2.47
SYNE4-202ENST00000340477 ARAP3Q8WWN8 1544 aa30.49■■■□□ 2.47
SYNE4-202ENST00000340477 COL17A1Q9UMD9 1497 aaPredicted RBP30.49■■■□□ 2.47
SYNE4-202ENST00000340477 FANCAO15360 1455 aa30.48■■■□□ 2.47
SYNE4-202ENST00000340477 PLCH2O75038 1416 aa30.44■■■□□ 2.46
SYNE4-202ENST00000340477 MTUS2Q5JR59 1369 aa30.42■■■□□ 2.46
SYNE4-202ENST00000340477 AKNAQ7Z591 1439 aa30.4■■■□□ 2.46
SYNE4-202ENST00000340477 ARHGAP5Q13017 1502 aa30.39■■■□□ 2.46
SYNE4-202ENST00000340477 EHBP1L1Q8N3D4 1523 aa30.39■■■□□ 2.46
SYNE4-202ENST00000340477 PREX2Q70Z35 1606 aa30.36■■■□□ 2.45
SYNE4-202ENST00000340477 EFCAB2Q5VUJ9 269 aa30.35■■■□□ 2.45
SYNE4-202ENST00000340477 TIAM1Q13009 1591 aa30.35■■■□□ 2.45
SYNE4-202ENST00000340477 DENND4BO75064 1496 aaPredicted RBP30.33■■■□□ 2.45
SYNE4-202ENST00000340477 ADGRL1O94910 1474 aa30.33■■■□□ 2.45
SYNE4-202ENST00000340477 CDC42BPAQ5VT25 1732 aa30.32■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms