RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 FGD5Q6ZNL6 1462 aa33.69■■■□□ 2.98
TSKU-201ENST00000333090 TIAM1Q13009 1591 aa33.68■■■□□ 2.98
TSKU-201ENST00000333090 SIN3AQ96ST3 1273 aa33.67■■■□□ 2.98
TSKU-201ENST00000333090 P3H3Q8IVL6 736 aa33.65■■■□□ 2.98
TSKU-201ENST00000333090 FAM50AQ14320 339 aaKnown RBP33.64■■■□□ 2.98
TSKU-201ENST00000333090 WDR97A6NE52 1622 aa33.63■■■□□ 2.97
TSKU-201ENST00000333090 PHLDB1Q86UU1 1377 aa33.61■■■□□ 2.97
TSKU-201ENST00000333090 FKBP8Q14318 412 aa33.6■■■□□ 2.97
TSKU-201ENST00000333090 MAP3K1Q13233 1512 aa33.59■■■□□ 2.97
TSKU-201ENST00000333090 LRRC9Q6ZRR7 1453 aa33.59■■■□□ 2.97
TSKU-201ENST00000333090 NESP48681 1621 aa33.59■■■□□ 2.97
TSKU-201ENST00000333090 CARMIL1Q5VZK9 1371 aa33.58■■■□□ 2.97
TSKU-201ENST00000333090 ANP32EQ9BTT0 268 aa33.57■■■□□ 2.96
TSKU-201ENST00000333090 FANCD2Q9BXW9 1451 aa33.54■■■□□ 2.96
TSKU-201ENST00000333090 PRDM2Q13029 1718 aa33.54■■■□□ 2.96
TSKU-201ENST00000333090 RAD54L2Q9Y4B4 1467 aa33.53■■■□□ 2.96
TSKU-201ENST00000333090 DNAJC5BQ9UF47 199 aa33.52■■■□□ 2.96
TSKU-201ENST00000333090 ATP1B4Q9UN42 357 aaPredicted RBP33.51■■■□□ 2.95
TSKU-201ENST00000333090 PPP1R15AO75807 674 aaPredicted RBP33.5■■■□□ 2.95
TSKU-201ENST00000333090 HIRIP3Q9BW71 556 aaPredicted RBP33.5■■■□□ 2.95
TSKU-201ENST00000333090 FHAD1B1AJZ9 1412 aa33.42■■■□□ 2.94
TSKU-201ENST00000333090 TIMELESSQ9UNS1 1208 aa33.41■■■□□ 2.94
TSKU-201ENST00000333090 NEFLP07196 543 aa33.41■■■□□ 2.94
TSKU-201ENST00000333090 TRIM52Q96A61 297 aa33.4■■■□□ 2.94
TSKU-201ENST00000333090 ANP32CO43423 234 aa33.37■■■□□ 2.93
TSKU-201ENST00000333090 CCER2I3L3R5 266 aa33.33■■■□□ 2.93
TSKU-201ENST00000333090 PCF11O94913 1555 aaKnown RBP33.33■■■□□ 2.93
TSKU-201ENST00000333090 CFAP43Q8NDM7 1665 aa33.31■■■□□ 2.92
TSKU-201ENST00000333090 POLA1P09884 1462 aaPredicted RBP33.29■■■□□ 2.92
TSKU-201ENST00000333090 TOPBP1Q92547 1522 aa33.27■■■□□ 2.92
TSKU-201ENST00000333090 FHOD3Q2V2M9 1422 aa33.24■■■□□ 2.91
TSKU-201ENST00000333090 RBM19Q9Y4C8 960 aaKnown RBP33.21■■■□□ 2.91
TSKU-201ENST00000333090 TONSLQ96HA7 1378 aa33.19■■■□□ 2.9
TSKU-201ENST00000333090 DNMBPQ6XZF7 1577 aa33.19■■■□□ 2.9
TSKU-201ENST00000333090 TDRD9Q8NDG6 1382 aaKnown RBP33.17■■■□□ 2.9
TSKU-201ENST00000333090 FYCO1Q9BQS8 1478 aa33.13■■■□□ 2.89
TSKU-201ENST00000333090 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.13■■■□□ 2.894e-6■■■■■ 30.2
TSKU-201ENST00000333090 ABCA10Q8WWZ4 1543 aa33.13■■■□□ 2.89
TSKU-201ENST00000333090 URB2Q14146 1524 aaKnown RBP33.1■■■□□ 2.89
TSKU-201ENST00000333090 CASKIN1Q8WXD9 1431 aa33.09■■■□□ 2.89
TSKU-201ENST00000333090 FGD6Q6ZV73 1430 aa33.06■■■□□ 2.88
TSKU-201ENST00000333090 CCDC18Q5T9S5 1454 aa33.06■■■□□ 2.88
TSKU-201ENST00000333090 EFCAB5A4FU69 1503 aa33■■■□□ 2.87
TSKU-201ENST00000333090 AQRO60306 1485 aaKnown RBP eCLIP32.99■■■□□ 2.87
TSKU-201ENST00000333090 UACAQ9BZF9 1416 aa32.98■■■□□ 2.87
TSKU-201ENST00000333090 MTUS2Q5JR59 1369 aa32.96■■■□□ 2.87
TSKU-201ENST00000333090 PTPRKQ15262 1439 aa32.96■■■□□ 2.87
TSKU-201ENST00000333090 HFM1A2PYH4 1435 aa32.96■■■□□ 2.87
TSKU-201ENST00000333090 HNRNPUQ00839 825 aaKnown RBP eCLIP32.95■■■□□ 2.87
TSKU-201ENST00000333090 FMN1Q68DA7 1419 aa32.91■■■□□ 2.86
TSKU-201ENST00000333090 PTPN23Q9H3S7 1636 aa32.89■■■□□ 2.86
TSKU-201ENST00000333090 IRX6P78412 446 aaPredicted RBP32.87■■■□□ 2.85
TSKU-201ENST00000333090 BCL11AQ9H165 835 aa32.86■■■□□ 2.85
TSKU-201ENST00000333090 LAMC3Q9Y6N6 1575 aa32.85■■■□□ 2.85
TSKU-201ENST00000333090 NAIPQ13075 1403 aa32.85■■■□□ 2.85
TSKU-201ENST00000333090 SNAPC4Q5SXM2 1469 aa32.84■■■□□ 2.85
TSKU-201ENST00000333090 GAPVD1Q14C86 1478 aa32.82■■■□□ 2.85
TSKU-201ENST00000333090 CTTNBP2Q8WZ74 1663 aa32.8■■■□□ 2.84
TSKU-201ENST00000333090 CUL7Q14999 1698 aa32.8■■■□□ 2.84
TSKU-201ENST00000333090 MSH5O43196 834 aa32.79■■■□□ 2.84
TSKU-201ENST00000333090 PDS5BQ9NTI5 1447 aa32.78■■■□□ 2.84
TSKU-201ENST00000333090 ARID3CA6NKF2 412 aa32.78■■■□□ 2.84
TSKU-201ENST00000333090 NCOA2Q15596 1464 aa32.77■■■□□ 2.84
TSKU-201ENST00000333090 KDM5BQ9UGL1 1544 aa32.77■■■□□ 2.84
TSKU-201ENST00000333090 MYOM3Q5VTT5 1437 aa32.76■■■□□ 2.84
TSKU-201ENST00000333090 KIF21AQ7Z4S6 1674 aa32.76■■■□□ 2.83
TSKU-201ENST00000333090 WASHC2AQ641Q2 1341 aa32.75■■■□□ 2.83
TSKU-201ENST00000333090 HSPA5P11021 654 aaKnown RBP32.75■■■□□ 2.83
TSKU-201ENST00000333090 CDK11AQ9UQ88 783 aaPredicted RBP32.75■■■□□ 2.83
TSKU-201ENST00000333090 ABCA5Q8WWZ7 1642 aa32.7■■■□□ 2.83
TSKU-201ENST00000333090 RRP7BPQ9NSQ0 103 aa32.7■■■□□ 2.83
TSKU-201ENST00000333090 CHIC2Q9UKJ5 165 aa32.67■■■□□ 2.82
TSKU-201ENST00000333090 LRRIQ1Q96JM4 1722 aa32.64■■■□□ 2.82
TSKU-201ENST00000333090 FANCIQ9NVI1 1328 aa32.64■■■□□ 2.82
TSKU-201ENST00000333090 EIF4G2P78344 907 aaKnown RBP eCLIP32.63■■■□□ 2.81
TSKU-201ENST00000333090 SUPT6HQ7KZ85 1726 aaKnown RBP32.62■■■□□ 2.81
TSKU-201ENST00000333090 GRIN2BQ13224 1484 aa32.61■■■□□ 2.81
TSKU-201ENST00000333090 CCDC184Q52MB2 194 aa32.6■■■□□ 2.81
TSKU-201ENST00000333090 SAMD9Q5K651 1589 aa32.58■■■□□ 2.81
TSKU-201ENST00000333090 EHBP1L1Q8N3D4 1523 aa32.57■■■□□ 2.81
TSKU-201ENST00000333090 ERICH6Q7L0X2 663 aa32.56■■■□□ 2.8
TSKU-201ENST00000333090 CNTLNQ9NXG0 1405 aa32.54■■■□□ 2.8
TSKU-201ENST00000333090 PPP4R2Q9NY27 417 aa32.53■■■□□ 2.8
TSKU-201ENST00000333090 DENND4BO75064 1496 aaPredicted RBP32.53■■■□□ 2.8
TSKU-201ENST00000333090 ERICH6BQ5W0A0 696 aa32.53■■■□□ 2.8
TSKU-201ENST00000333090 TARBP1Q13395 1621 aaKnown RBP32.53■■■□□ 2.8
TSKU-201ENST00000333090 FAM9BQ8IZU0 186 aa32.52■■■□□ 2.8
TSKU-201ENST00000333090 UGGT2Q9NYU1 1516 aa32.52■■■□□ 2.8
TSKU-201ENST00000333090 THOC2Q8NI27 1593 aaKnown RBP32.5■■■□□ 2.79
TSKU-201ENST00000333090 L3MBTL2Q969R5 705 aa32.49■■■□□ 2.79
TSKU-201ENST00000333090 C11orf95C9JLR9 678 aaPredicted RBP32.48■■■□□ 2.79
TSKU-201ENST00000333090 PRKRIP1Q9H875 184 aaPredicted RBP32.48■■■□□ 2.79
TSKU-201ENST00000333090 MAGI3Q5TCQ9 1506 aa32.47■■■□□ 2.79
TSKU-201ENST00000333090 MPHOSPH9Q99550 1183 aa32.47■■■□□ 2.79
TSKU-201ENST00000333090 HECW1Q76N89 1606 aa32.46■■■□□ 2.79
TSKU-201ENST00000333090 FOXD1Q16676 465 aa32.46■■■□□ 2.79
TSKU-201ENST00000333090 MRS2Q9HD23 443 aa32.46■■■□□ 2.79
TSKU-201ENST00000333090 ARHGEF11O15085 1522 aa32.45■■■□□ 2.78
TSKU-201ENST00000333090 CCDC7Q96M83 1385 aa32.43■■■□□ 2.78
TSKU-201ENST00000333090 GCC2Q8IWJ2 1684 aa32.42■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms