RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 CEP170Q5SW79 1584 aa24.86■■□□□ 1.57
PDLIM5-202ENST00000318007 CTTNBP2Q8WZ74 1663 aa24.82■■□□□ 1.56
PDLIM5-202ENST00000318007 TNIKQ9UKE5 1360 aa24.81■■□□□ 1.56
PDLIM5-202ENST00000318007 NUP160Q12769 1436 aa24.76■■□□□ 1.55
PDLIM5-202ENST00000318007 CEP162Q5TB80 1403 aa24.74■■□□□ 1.55
PDLIM5-202ENST00000318007 P3H3Q8IVL6 736 aa24.73■■□□□ 1.55
PDLIM5-202ENST00000318007 IQGAP2Q13576 1575 aa24.72■■□□□ 1.55
PDLIM5-202ENST00000318007 KIAA0586Q9BVV6 1533 aa24.7■■□□□ 1.55
PDLIM5-202ENST00000318007 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
PDLIM5-202ENST00000318007 TTBK1Q5TCY1 1321 aaPredicted RBP24.69■■□□□ 1.54
PDLIM5-202ENST00000318007 CLIP1P30622 1438 aa24.67■■□□□ 1.54
PDLIM5-202ENST00000318007 JPH4Q96JJ6 628 aa24.63■■□□□ 1.53
PDLIM5-202ENST00000318007 CLASP1Q7Z460 1538 aa24.61■■□□□ 1.53
PDLIM5-202ENST00000318007 ARHGAP35Q9NRY4 1499 aa24.58■■□□□ 1.53
PDLIM5-202ENST00000318007 FHOD3Q2V2M9 1422 aa24.56■■□□□ 1.52
PDLIM5-202ENST00000318007 PRG4Q92954 1404 aaPredicted RBP24.54■■□□□ 1.52
PDLIM5-202ENST00000318007 ERCC6L2Q5T890 1561 aa24.53■■□□□ 1.52
PDLIM5-202ENST00000318007 UGGT2Q9NYU1 1516 aa24.53■■□□□ 1.52
PDLIM5-202ENST00000318007 ARAP1Q96P48 1450 aa24.52■■□□□ 1.52
PDLIM5-202ENST00000318007 DISP1Q96F81 1524 aa24.51■■□□□ 1.51
PDLIM5-202ENST00000318007 SAMD9Q5K651 1589 aa24.49■■□□□ 1.51
PDLIM5-202ENST00000318007 KIAA0556O60303 1618 aa24.49■■□□□ 1.51
PDLIM5-202ENST00000318007 SHROOM2Q13796 1616 aa24.48■■□□□ 1.51
PDLIM5-202ENST00000318007 EFCAB5A4FU69 1503 aa24.47■■□□□ 1.51
PDLIM5-202ENST00000318007 CARMIL2Q6F5E8 1435 aa24.44■■□□□ 1.5
PDLIM5-202ENST00000318007 ATP1B4Q9UN42 357 aaPredicted RBP24.42■■□□□ 1.5
PDLIM5-202ENST00000318007 ARID3CA6NKF2 412 aa24.36■■□□□ 1.49
PDLIM5-202ENST00000318007 VPS8Q8N3P4 1428 aa24.33■■□□□ 1.49
PDLIM5-202ENST00000318007 ARHGEF11O15085 1522 aa24.32■■□□□ 1.48
PDLIM5-202ENST00000318007 PTPRGP23470 1445 aa24.3■■□□□ 1.48
PDLIM5-202ENST00000318007 PCF11O94913 1555 aaKnown RBP24.29■■□□□ 1.48
PDLIM5-202ENST00000318007 PPARGC1BQ86YN6 1023 aaKnown RBP24.29■■□□□ 1.48
PDLIM5-202ENST00000318007 PLB1Q6P1J6 1458 aa24.29■■□□□ 1.48
PDLIM5-202ENST00000318007 FMN1Q68DA7 1419 aa24.28■■□□□ 1.48
PDLIM5-202ENST00000318007 RIMBP3CA6NJZ7 1639 aa24.25■■□□□ 1.47
PDLIM5-202ENST00000318007 RIMBP3BA6NNM3 1639 aa24.25■■□□□ 1.47
PDLIM5-202ENST00000318007 RIMBP3Q9UFD9 1639 aa24.25■■□□□ 1.47
PDLIM5-202ENST00000318007 CYB5RLQ6IPT4 315 aa24.2■■□□□ 1.46
PDLIM5-202ENST00000318007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.18■■□□□ 1.46
PDLIM5-202ENST00000318007 HNRNPUL2Q1KMD3 747 aaKnown RBP24.18■■□□□ 1.46
PDLIM5-202ENST00000318007 RAPGEF6Q8TEU7 1601 aa24.18■■□□□ 1.46
PDLIM5-202ENST00000318007 CASKIN1Q8WXD9 1431 aa24.17■■□□□ 1.46
PDLIM5-202ENST00000318007 APLP2Q06481 763 aa24.15■■□□□ 1.46
PDLIM5-202ENST00000318007 FYCO1Q9BQS8 1478 aa24.15■■□□□ 1.46
PDLIM5-202ENST00000318007 LRRIQ1Q96JM4 1722 aa24.13■■□□□ 1.45
PDLIM5-202ENST00000318007 UACAQ9BZF9 1416 aa24.13■■□□□ 1.45
PDLIM5-202ENST00000318007 NUP153P49790 1475 aaKnown RBP24.12■■□□□ 1.45
PDLIM5-202ENST00000318007 ABCA8O94911 1581 aa24.12■■□□□ 1.45
PDLIM5-202ENST00000318007 CDK13Q14004 1512 aaKnown RBP24.12■■□□□ 1.45
PDLIM5-202ENST00000318007 HECW1Q76N89 1606 aa24.12■■□□□ 1.45
PDLIM5-202ENST00000318007 EPRSP07814 1512 aaKnown RBP24.06■■□□□ 1.44
PDLIM5-202ENST00000318007 ABCC2Q92887 1545 aa24.06■■□□□ 1.44
PDLIM5-202ENST00000318007 ADCY10Q96PN6 1610 aa24.06■■□□□ 1.44
PDLIM5-202ENST00000318007 KANK4Q5T7N3 995 aaPredicted RBP24.05■■□□□ 1.44
PDLIM5-202ENST00000318007 DNAJC5Q9H3Z4 198 aa24.03■■□□□ 1.44
PDLIM5-202ENST00000318007 TIAM1Q13009 1591 aa24.01■■□□□ 1.43
PDLIM5-202ENST00000318007 ATP10BO94823 1461 aa24■■□□□ 1.43
PDLIM5-202ENST00000318007 CFAP43Q8NDM7 1665 aa23.98■■□□□ 1.43
PDLIM5-202ENST00000318007 CCDC18Q5T9S5 1454 aa23.98■■□□□ 1.43
PDLIM5-202ENST00000318007 ZCCHC11Q5TAX3 1644 aaKnown RBP23.95■■□□□ 1.43
PDLIM5-202ENST00000318007 UHRF1BP1LA0JNW5 1464 aa23.95■■□□□ 1.42
PDLIM5-202ENST00000318007 MAGI3Q5TCQ9 1506 aa23.94■■□□□ 1.42
PDLIM5-202ENST00000318007 MTUS2Q5JR59 1369 aa23.94■■□□□ 1.42
PDLIM5-202ENST00000318007 NPM1P06748 294 aaKnown RBP eCLIP23.92■■□□□ 1.42
PDLIM5-202ENST00000318007 LRRC9Q6ZRR7 1453 aa23.91■■□□□ 1.42
PDLIM5-202ENST00000318007 KDM5BQ9UGL1 1544 aa23.9■■□□□ 1.42
PDLIM5-202ENST00000318007 PLEKHD1A6NEE1 506 aa23.87■■□□□ 1.41
PDLIM5-202ENST00000318007 KCNH8Q96L42 1107 aa23.87■■□□□ 1.41
PDLIM5-202ENST00000318007 CDK11AQ9UQ88 783 aaPredicted RBP23.87■■□□□ 1.41
PDLIM5-202ENST00000318007 MAP3K1Q13233 1512 aa23.86■■□□□ 1.41
PDLIM5-202ENST00000318007 EHBP1L1Q8N3D4 1523 aa23.81■■□□□ 1.4
PDLIM5-202ENST00000318007 ASXL2Q76L83 1435 aa23.8■■□□□ 1.4
PDLIM5-202ENST00000318007 KIF14Q15058 1648 aa23.8■■□□□ 1.4
PDLIM5-202ENST00000318007 TROQ12816 1431 aaPredicted RBP23.79■■□□□ 1.4
PDLIM5-202ENST00000318007 WDR7Q9Y4E6 1490 aa23.75■■□□□ 1.39
PDLIM5-202ENST00000318007 NCOA2Q15596 1464 aa23.74■■□□□ 1.39
PDLIM5-202ENST00000318007 SUPT6HQ7KZ85 1726 aaKnown RBP23.74■■□□□ 1.39
PDLIM5-202ENST00000318007 PHLDB1Q86UU1 1377 aa23.72■■□□□ 1.39
PDLIM5-202ENST00000318007 TTC37Q6PGP7 1564 aa23.67■■□□□ 1.38
PDLIM5-202ENST00000318007 MAPKBP1O60336 1514 aa23.66■■□□□ 1.38
PDLIM5-202ENST00000318007 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.65■■□□□ 1.38
PDLIM5-202ENST00000318007 CCNB3Q8WWL7 1395 aa23.65■■□□□ 1.38
PDLIM5-202ENST00000318007 ZNF777Q9ULD5 760 aaPredicted RBP23.61■■□□□ 1.37
PDLIM5-202ENST00000318007 ABCC10Q5T3U5 1492 aa23.6■■□□□ 1.37
PDLIM5-202ENST00000318007 FAM69CQ0P6D2 419 aa23.6■■□□□ 1.37
PDLIM5-202ENST00000318007 FAM50AQ14320 339 aaKnown RBP23.59■■□□□ 1.37
PDLIM5-202ENST00000318007 MYOM3Q5VTT5 1437 aa23.58■■□□□ 1.37
PDLIM5-202ENST00000318007 GPATCH8Q9UKJ3 1502 aaKnown RBP23.57■■□□□ 1.36
PDLIM5-202ENST00000318007 ITGAEP38570 1179 aa23.56■■□□□ 1.36
PDLIM5-202ENST00000318007 CDC42BPAQ5VT25 1732 aa23.56■■□□□ 1.36
PDLIM5-202ENST00000318007 CFDP1Q9UEE9 299 aaPredicted RBP23.56■■□□□ 1.36
PDLIM5-202ENST00000318007 ZNF644Q9H582 1327 aaPredicted RBP23.55■■□□□ 1.36
PDLIM5-202ENST00000318007 DIP2BQ9P265 1576 aa23.54■■□□□ 1.36
PDLIM5-202ENST00000318007 FGD6Q6ZV73 1430 aa23.54■■□□□ 1.36
PDLIM5-202ENST00000318007 TRHP20396 242 aaPredicted RBP23.54■■□□□ 1.36
PDLIM5-202ENST00000318007 PCGF6Q9BYE7 350 aa23.53■■□□□ 1.36
PDLIM5-202ENST00000318007 ARHGAP5Q13017 1502 aa23.52■■□□□ 1.36
PDLIM5-202ENST00000318007 MYO5CQ9NQX4 1742 aa23.52■■□□□ 1.36
PDLIM5-202ENST00000318007 TRIM26Q12899 539 aaPredicted RBP23.52■■□□□ 1.36
PDLIM5-202ENST00000318007 ABCA9Q8IUA7 1624 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms