RNA–Protein interactions for RNA: ENST00000315585.11

CHFR-202, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-202ENST00000315585 PBRM1Q86U86 1689 aa22.4■■□□□ 1.18
CHFR-202ENST00000315585 THOC2Q8NI27 1593 aaKnown RBP22.4■■□□□ 1.18
CHFR-202ENST00000315585 GRIN2BQ13224 1484 aa22.37■■□□□ 1.17
CHFR-202ENST00000315585 EFCAB5A4FU69 1503 aa22.36■■□□□ 1.17
CHFR-202ENST00000315585 FHAD1B1AJZ9 1412 aa22.35■■□□□ 1.17
CHFR-202ENST00000315585 AQRO60306 1485 aaKnown RBP eCLIP22.34■■□□□ 1.171e-7■■■■■ 49.5
CHFR-202ENST00000315585 ADAMTS12P58397 1594 aa22.29■■□□□ 1.16
CHFR-202ENST00000315585 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
CHFR-202ENST00000315585 MAP3K1Q13233 1512 aa22.24■■□□□ 1.15
CHFR-202ENST00000315585 HNRNPUL2Q1KMD3 747 aaKnown RBP22.23■■□□□ 1.15
CHFR-202ENST00000315585 EIF4G3O43432 1585 aaKnown RBP22.23■■□□□ 1.15
CHFR-202ENST00000315585 DIEXFQ68CQ4 756 aaKnown RBP22.18■■□□□ 1.14
CHFR-202ENST00000315585 FMN1Q68DA7 1419 aa22.18■■□□□ 1.14
CHFR-202ENST00000315585 SAMD9Q5K651 1589 aa22.18■■□□□ 1.14
CHFR-202ENST00000315585 FHOD3Q2V2M9 1422 aa22.16■■□□□ 1.14
CHFR-202ENST00000315585 MAGI1Q96QZ7 1491 aaPredicted RBP22.16■■□□□ 1.14
CHFR-202ENST00000315585 CLSPNQ9HAW4 1339 aa22.15■■□□□ 1.14
CHFR-202ENST00000315585 SNAPC4Q5SXM2 1469 aa22.15■■□□□ 1.14
CHFR-202ENST00000315585 P3H3Q8IVL6 736 aa22.15■■□□□ 1.14
CHFR-202ENST00000315585 TIAM1Q13009 1591 aa22.14■■□□□ 1.13
CHFR-202ENST00000315585 FYCO1Q9BQS8 1478 aa22.14■■□□□ 1.13
CHFR-202ENST00000315585 IQGAP2Q13576 1575 aa22.13■■□□□ 1.13
CHFR-202ENST00000315585 CASKIN1Q8WXD9 1431 aa22.12■■□□□ 1.13
CHFR-202ENST00000315585 ZNF316A6NFI3 1004 aaPredicted RBP22.12■■□□□ 1.13
CHFR-202ENST00000315585 KANK4Q5T7N3 995 aaPredicted RBP22.11■■□□□ 1.13
CHFR-202ENST00000315585 PCF11O94913 1555 aaKnown RBP22.11■■□□□ 1.13
CHFR-202ENST00000315585 GRIN2AQ12879 1464 aa22.08■■□□□ 1.13
CHFR-202ENST00000315585 CFAP43Q8NDM7 1665 aa22.07■■□□□ 1.12
CHFR-202ENST00000315585 SYNJ2O15056 1496 aa22.07■■□□□ 1.12
CHFR-202ENST00000315585 RRBP1Q9P2E9 1410 aaKnown RBP22.06■■□□□ 1.12
CHFR-202ENST00000315585 KIAA0586Q9BVV6 1533 aa22.06■■□□□ 1.12
CHFR-202ENST00000315585 LRRC9Q6ZRR7 1453 aa22.04■■□□□ 1.12
CHFR-202ENST00000315585 UGGT2Q9NYU1 1516 aa22.03■■□□□ 1.12
CHFR-202ENST00000315585 CHMP7Q8WUX9 453 aaPredicted RBP22.02■■□□□ 1.12
CHFR-202ENST00000315585 ATP1B4Q9UN42 357 aaPredicted RBP22.01■■□□□ 1.11
CHFR-202ENST00000315585 CENPBP07199 599 aaPredicted RBP21.98■■□□□ 1.11
CHFR-202ENST00000315585 CCNB3Q8WWL7 1395 aa21.97■■□□□ 1.11
CHFR-202ENST00000315585 NUP160Q12769 1436 aa21.9■■□□□ 1.1
CHFR-202ENST00000315585 CCDC18Q5T9S5 1454 aa21.9■■□□□ 1.1
CHFR-202ENST00000315585 FBLN2P98095 1184 aa21.9■■□□□ 1.1
CHFR-202ENST00000315585 HECW1Q76N89 1606 aa21.89■■□□□ 1.1
CHFR-202ENST00000315585 CEP170Q5SW79 1584 aa21.89■■□□□ 1.09
CHFR-202ENST00000315585 KIAA0556O60303 1618 aa21.89■■□□□ 1.09
CHFR-202ENST00000315585 DHX57Q6P158 1386 aaKnown RBP21.89■■□□□ 1.09
CHFR-202ENST00000315585 ACIN1Q9UKV3 1341 aaKnown RBP21.88■■□□□ 1.09
CHFR-202ENST00000315585 DISP1Q96F81 1524 aa21.85■■□□□ 1.09
CHFR-202ENST00000315585 MTUS2Q5JR59 1369 aa21.85■■□□□ 1.09
CHFR-202ENST00000315585 SCAF1Q9H7N4 1312 aaKnown RBP21.83■■□□□ 1.08
CHFR-202ENST00000315585 CARMIL2Q6F5E8 1435 aa21.82■■□□□ 1.08
CHFR-202ENST00000315585 PHLDB1Q86UU1 1377 aa21.81■■□□□ 1.08
CHFR-202ENST00000315585 EHBP1L1Q8N3D4 1523 aa21.81■■□□□ 1.08
CHFR-202ENST00000315585 LRRIQ1Q96JM4 1722 aa21.81■■□□□ 1.08
CHFR-202ENST00000315585 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.77■■□□□ 1.082e-6■■■□□ 17.8
CHFR-202ENST00000315585 EPRSP07814 1512 aaKnown RBP21.77■■□□□ 1.08
CHFR-202ENST00000315585 JPH4Q96JJ6 628 aa21.77■■□□□ 1.08
CHFR-202ENST00000315585 SUPT6HQ7KZ85 1726 aaKnown RBP21.76■■□□□ 1.07
CHFR-202ENST00000315585 RAPGEF6Q8TEU7 1601 aa21.72■■□□□ 1.07
CHFR-202ENST00000315585 NEUROD1Q13562 356 aa21.71■■□□□ 1.07
CHFR-202ENST00000315585 NCOA2Q15596 1464 aa21.7■■□□□ 1.06
CHFR-202ENST00000315585 FAM50AQ14320 339 aaKnown RBP21.69■■□□□ 1.06
CHFR-202ENST00000315585 CHD1O14646 1710 aa21.69■■□□□ 1.06
CHFR-202ENST00000315585 FGD6Q6ZV73 1430 aa21.68■■□□□ 1.06
CHFR-202ENST00000315585 SETD5Q9C0A6 1442 aa21.68■■□□□ 1.06
CHFR-202ENST00000315585 MYOM3Q5VTT5 1437 aa21.67■■□□□ 1.06
CHFR-202ENST00000315585 PELP1Q8IZL8 1130 aaKnown RBP21.67■■□□□ 1.06
CHFR-202ENST00000315585 CDK11AQ9UQ88 783 aaPredicted RBP21.67■■□□□ 1.06
CHFR-202ENST00000315585 ITGAEP38570 1179 aa21.66■■□□□ 1.06
CHFR-202ENST00000315585 RAB3GAP2Q9H2M9 1393 aa21.66■■□□□ 1.06
CHFR-202ENST00000315585 ARHGEF11O15085 1522 aa21.65■■□□□ 1.06
CHFR-202ENST00000315585 CDK13Q14004 1512 aaKnown RBP21.65■■□□□ 1.06
CHFR-202ENST00000315585 NUP153P49790 1475 aaKnown RBP21.64■■□□□ 1.06
CHFR-202ENST00000315585 MAGI3Q5TCQ9 1506 aa21.64■■□□□ 1.05
CHFR-202ENST00000315585 MIER1Q8N108 512 aa21.6■■□□□ 1.05
CHFR-202ENST00000315585 PRG4Q92954 1404 aaPredicted RBP21.59■■□□□ 1.05
CHFR-202ENST00000315585 TIMELESSQ9UNS1 1208 aa21.58■■□□□ 1.04
CHFR-202ENST00000315585 PLB1Q6P1J6 1458 aa21.57■■□□□ 1.04
CHFR-202ENST00000315585 MIA2Q96PC5 1412 aa21.56■■□□□ 1.04
CHFR-202ENST00000315585 SHROOM2Q13796 1616 aa21.55■■□□□ 1.04
CHFR-202ENST00000315585 ABCA8O94911 1581 aa21.55■■□□□ 1.04
CHFR-202ENST00000315585 PTPN23Q9H3S7 1636 aa21.54■■□□□ 1.04
CHFR-202ENST00000315585 ARID3CA6NKF2 412 aa21.53■■□□□ 1.04
CHFR-202ENST00000315585 GTF3C3Q9Y5Q9 886 aa21.53■■□□□ 1.04
CHFR-202ENST00000315585 PTPRGP23470 1445 aa21.52■■□□□ 1.04
CHFR-202ENST00000315585 TCOF1Q13428 1488 aaKnown RBP21.52■■□□□ 1.04
CHFR-202ENST00000315585 TROQ12816 1431 aaPredicted RBP21.51■■□□□ 1.03
CHFR-202ENST00000315585 MAPKBP1O60336 1514 aa21.48■■□□□ 1.03
CHFR-202ENST00000315585 ADCY10Q96PN6 1610 aa21.45■■□□□ 1.02
CHFR-202ENST00000315585 CLASP1Q7Z460 1538 aa21.45■■□□□ 1.02
CHFR-202ENST00000315585 PLEKHD1A6NEE1 506 aa21.43■■□□□ 1.02
CHFR-202ENST00000315585 YTHDC1Q96MU7 727 aaKnown RBP21.43■■□□□ 1.02
CHFR-202ENST00000315585 ATP10BO94823 1461 aa21.42■■□□□ 1.02
CHFR-202ENST00000315585 HFM1A2PYH4 1435 aa21.41■■□□□ 1.02
CHFR-202ENST00000315585 ITSN2Q9NZM3 1697 aa21.41■■□□□ 1.02
CHFR-202ENST00000315585 UACAQ9BZF9 1416 aa21.4■■□□□ 1.02
CHFR-202ENST00000315585 PTPRKQ15262 1439 aa21.37■■□□□ 1.01
CHFR-202ENST00000315585 AKNAQ7Z591 1439 aa21.37■■□□□ 1.01
CHFR-202ENST00000315585 KIF14Q15058 1648 aa21.36■■□□□ 1.01
CHFR-202ENST00000315585 NAIPQ13075 1403 aa21.32■■□□□ 1
CHFR-202ENST00000315585 ABCC2Q92887 1545 aa21.32■■□□□ 1
CHFR-202ENST00000315585 GPATCH8Q9UKJ3 1502 aaKnown RBP21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms