RNA–Protein interactions for RNA: ENST00000315585.11

CHFR-202, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 2,446 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-202ENST00000315585 NISCHQ9Y2I1 1504 aa32.27■■■□□ 2.76
CHFR-202ENST00000315585 CCDC180Q9P1Z9 1646 aa28.06■■■□□ 2.08
CHFR-202ENST00000315585 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
CHFR-202ENST00000315585 DCAF1Q9Y4B6 1507 aa26.74■■□□□ 1.87
CHFR-202ENST00000315585 DCAF8L2P0C7V8 631 aa26.59■■□□□ 1.85
CHFR-202ENST00000315585 SHROOM4Q9ULL8 1493 aa26.45■■□□□ 1.82
CHFR-202ENST00000315585 MYO15BQ96JP2 1530 aa26.34■■□□□ 1.81
CHFR-202ENST00000315585 ABCC9O60706 1549 aa26.24■■□□□ 1.79
CHFR-202ENST00000315585 NACADO15069 1562 aa26.09■■□□□ 1.77
CHFR-202ENST00000315585 RB1CC1Q8TDY2 1594 aa25.81■■□□□ 1.72
CHFR-202ENST00000315585 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
CHFR-202ENST00000315585 SUPT5HO00267 1087 aaKnown RBP25.66■■□□□ 1.7
CHFR-202ENST00000315585 UNC13AQ9UPW8 1703 aa25.19■■□□□ 1.62
CHFR-202ENST00000315585 RSF1Q96T23 1441 aaPredicted RBP25.12■■□□□ 1.61
CHFR-202ENST00000315585 CECR2Q9BXF3 1484 aa25■■□□□ 1.59
CHFR-202ENST00000315585 CHIC1Q5VXU3 224 aa24.98■■□□□ 1.59
CHFR-202ENST00000315585 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
CHFR-202ENST00000315585 BICRAQ9NZM4 1560 aa24.92■■□□□ 1.58
CHFR-202ENST00000315585 MROH2BQ7Z745 1585 aa24.9■■□□□ 1.58
CHFR-202ENST00000315585 PABPN1Q86U42 306 aaKnown RBP eCLIP24.78■■□□□ 1.56
CHFR-202ENST00000315585 SMARCA4P51532 1647 aa24.75■■□□□ 1.55
CHFR-202ENST00000315585 WIZO95785 1651 aa24.71■■□□□ 1.55
CHFR-202ENST00000315585 TOP2AP11388 1531 aaKnown RBP24.52■■□□□ 1.52
CHFR-202ENST00000315585 PEG3Q9GZU2 1588 aa24.46■■□□□ 1.51
CHFR-202ENST00000315585 SMARCA2P51531 1590 aa24.33■■□□□ 1.49
CHFR-202ENST00000315585 ATAD2BQ9ULI0 1458 aa24.28■■□□□ 1.48
CHFR-202ENST00000315585 CCDC88BA6NC98 1476 aa24.25■■□□□ 1.47
CHFR-202ENST00000315585 EIF4G1Q04637 1599 aaKnown RBP24.2■■□□□ 1.46
CHFR-202ENST00000315585 BAZ1BQ9UIG0 1483 aaKnown RBP24.19■■□□□ 1.46
CHFR-202ENST00000315585 TRIM41Q8WV44 630 aa24.14■■□□□ 1.45
CHFR-202ENST00000315585 NCAPD3P42695 1498 aa24.06■■□□□ 1.44
CHFR-202ENST00000315585 LOC105371045A0A1W2PR82 267 aa24.05■■□□□ 1.44
CHFR-202ENST00000315585 HMGXB3Q12766 1538 aa24.05■■□□□ 1.44
CHFR-202ENST00000315585 HRCP23327 699 aa23.99■■□□□ 1.43
CHFR-202ENST00000315585 PCGF6Q9BYE7 350 aa23.97■■□□□ 1.43
CHFR-202ENST00000315585 TRIM26Q12899 539 aaPredicted RBP23.79■■□□□ 1.4
CHFR-202ENST00000315585 ABCC8Q09428 1581 aa23.78■■□□□ 1.4
CHFR-202ENST00000315585 CC2D2AQ9P2K1 1620 aa23.76■■□□□ 1.39
CHFR-202ENST00000315585 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.381e-6■■■■■ 52.5
CHFR-202ENST00000315585 FAM9AQ8IZU1 332 aaPredicted RBP23.63■■□□□ 1.37
CHFR-202ENST00000315585 CFTRP13569 1480 aa23.58■■□□□ 1.37
CHFR-202ENST00000315585 EEA1Q15075 1411 aa23.55■■□□□ 1.36
CHFR-202ENST00000315585 SYNJ1O43426 1573 aa23.5■■□□□ 1.35
CHFR-202ENST00000315585 PRDM2Q13029 1718 aa23.49■■□□□ 1.35
CHFR-202ENST00000315585 CADPSQ9ULU8 1353 aa23.47■■□□□ 1.35
CHFR-202ENST00000315585 TOP2BQ02880 1626 aa23.44■■□□□ 1.34
CHFR-202ENST00000315585 BIVM-ERCC5R4GMW8 1640 aa23.41■■□□□ 1.34
CHFR-202ENST00000315585 ZEB1P37275 1124 aaPredicted RBP23.41■■□□□ 1.34
CHFR-202ENST00000315585 SOGA1O94964 1423 aa23.4■■□□□ 1.34
CHFR-202ENST00000315585 CSRNP3Q8WYN3 585 aa23.34■■□□□ 1.33
CHFR-202ENST00000315585 CUX1P39880 1505 aa23.28■■□□□ 1.32
CHFR-202ENST00000315585 RUSC2Q8N2Y8 1516 aa23.26■■□□□ 1.31
CHFR-202ENST00000315585 EHMT2Q96KQ7 1210 aa23.24■■□□□ 1.31
CHFR-202ENST00000315585 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
CHFR-202ENST00000315585 FANCD2Q9BXW9 1451 aa23.19■■□□□ 1.3
CHFR-202ENST00000315585 GOLGA3Q08378 1498 aa23.19■■□□□ 1.3
CHFR-202ENST00000315585 PPARGC1BQ86YN6 1023 aaKnown RBP23.18■■□□□ 1.3
CHFR-202ENST00000315585 CEP164Q9UPV0 1460 aa23.17■■□□□ 1.3
CHFR-202ENST00000315585 TNIKQ9UKE5 1360 aa23.16■■□□□ 1.3
CHFR-202ENST00000315585 KIF21BO75037 1637 aa23.16■■□□□ 1.3
CHFR-202ENST00000315585 KIF27Q86VH2 1401 aa23.09■■□□□ 1.29
CHFR-202ENST00000315585 NESP48681 1621 aa23.09■■□□□ 1.29
CHFR-202ENST00000315585 UBTFP17480 764 aaKnown RBP23.08■■□□□ 1.28
CHFR-202ENST00000315585 PDS5BQ9NTI5 1447 aa23.05■■□□□ 1.28
CHFR-202ENST00000315585 DNMBPQ6XZF7 1577 aa23.04■■□□□ 1.28
CHFR-202ENST00000315585 CEP162Q5TB80 1403 aa23.03■■□□□ 1.28
CHFR-202ENST00000315585 FGD5Q6ZNL6 1462 aa23.01■■□□□ 1.27
CHFR-202ENST00000315585 ERICH3Q5RHP9 1530 aa22.98■■□□□ 1.27
CHFR-202ENST00000315585 TOPBP1Q92547 1522 aa22.96■■□□□ 1.27
CHFR-202ENST00000315585 DNAJC5BQ9UF47 199 aa22.95■■□□□ 1.26
CHFR-202ENST00000315585 PRXQ9BXM0 1461 aa22.94■■□□□ 1.26
CHFR-202ENST00000315585 RAPGEF2Q9Y4G8 1499 aa22.93■■□□□ 1.26
CHFR-202ENST00000315585 CUX2O14529 1486 aa22.92■■□□□ 1.26
CHFR-202ENST00000315585 POLA1P09884 1462 aaPredicted RBP22.86■■□□□ 1.25
CHFR-202ENST00000315585 URB2Q14146 1524 aaKnown RBP22.85■■□□□ 1.25
CHFR-202ENST00000315585 KIF21AQ7Z4S6 1674 aa22.84■■□□□ 1.25
CHFR-202ENST00000315585 ABCA10Q8WWZ4 1543 aa22.84■■□□□ 1.25
CHFR-202ENST00000315585 CLIP1P30622 1438 aa22.81■■□□□ 1.24
CHFR-202ENST00000315585 IGF1RP08069 1367 aa22.8■■□□□ 1.24
CHFR-202ENST00000315585 RAD54L2Q9Y4B4 1467 aa22.76■■□□□ 1.23
CHFR-202ENST00000315585 CARMIL1Q5VZK9 1371 aa22.72■■□□□ 1.23
CHFR-202ENST00000315585 CCER1Q8TC90 406 aaPredicted RBP22.72■■□□□ 1.23
CHFR-202ENST00000315585 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
CHFR-202ENST00000315585 WDR97A6NE52 1622 aa22.7■■□□□ 1.22
CHFR-202ENST00000315585 CUL7Q14999 1698 aa22.65■■□□□ 1.22
CHFR-202ENST00000315585 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
CHFR-202ENST00000315585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.61■■□□□ 1.21
CHFR-202ENST00000315585 APLP2Q06481 763 aa22.6■■□□□ 1.21
CHFR-202ENST00000315585 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
CHFR-202ENST00000315585 GAPVD1Q14C86 1478 aa22.57■■□□□ 1.2
CHFR-202ENST00000315585 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
CHFR-202ENST00000315585 WDR62O43379 1518 aa22.56■■□□□ 1.2
CHFR-202ENST00000315585 RANGAP1P46060 587 aaPredicted RBP22.55■■□□□ 1.2
CHFR-202ENST00000315585 ERCC6Q03468 1493 aa22.54■■□□□ 1.2
CHFR-202ENST00000315585 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
CHFR-202ENST00000315585 TTBK1Q5TCY1 1321 aaPredicted RBP22.5■■□□□ 1.19
CHFR-202ENST00000315585 ARAP1Q96P48 1450 aa22.5■■□□□ 1.19
CHFR-202ENST00000315585 IFT140Q96RY7 1462 aa22.49■■□□□ 1.19
CHFR-202ENST00000315585 ARHGAP35Q9NRY4 1499 aa22.46■■□□□ 1.19
CHFR-202ENST00000315585 CTTNBP2Q8WZ74 1663 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms