RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 IGF1RP08069 1367 aa11.27□□□□□ -0.6
PTCD2-201ENST00000308077 CERKQ8TCT0 537 aa11.27□□□□□ -0.6
PTCD2-201ENST00000308077 ERICH3Q5RHP9 1530 aa11.26□□□□□ -0.61
PTCD2-201ENST00000308077 TDRD9Q8NDG6 1382 aaKnown RBP11.26□□□□□ -0.61
PTCD2-201ENST00000308077 KDM6BO15054 1643 aa11.25□□□□□ -0.61
PTCD2-201ENST00000308077 IFT140Q96RY7 1462 aa11.25□□□□□ -0.61
PTCD2-201ENST00000308077 TNIKQ9UKE5 1360 aa11.24□□□□□ -0.61
PTCD2-201ENST00000308077 GAPVD1Q14C86 1478 aa11.23□□□□□ -0.61
PTCD2-201ENST00000308077 PBRM1Q86U86 1689 aa11.22□□□□□ -0.61
PTCD2-201ENST00000308077 ZNF608Q9ULD9 1512 aaPredicted RBP11.22□□□□□ -0.61
PTCD2-201ENST00000308077 UBTFP17480 764 aaKnown RBP11.21□□□□□ -0.61
PTCD2-201ENST00000308077 CUL7Q14999 1698 aa11.21□□□□□ -0.61
PTCD2-201ENST00000308077 CARMIL1Q5VZK9 1371 aa11.21□□□□□ -0.62
PTCD2-201ENST00000308077 AQRO60306 1485 aaKnown RBP eCLIP11.2□□□□□ -0.62
PTCD2-201ENST00000308077 EIF4G3O43432 1585 aaKnown RBP11.19□□□□□ -0.62
PTCD2-201ENST00000308077 CEP162Q5TB80 1403 aa11.19□□□□□ -0.62
PTCD2-201ENST00000308077 GRIN2BQ13224 1484 aa11.15□□□□□ -0.62
PTCD2-201ENST00000308077 CHD1O14646 1710 aa11.15□□□□□ -0.62
PTCD2-201ENST00000308077 ADAMTS12P58397 1594 aa11.14□□□□□ -0.63
PTCD2-201ENST00000308077 CLIP1P30622 1438 aa11.11□□□□□ -0.63
PTCD2-201ENST00000308077 SNAPC4Q5SXM2 1469 aa11.11□□□□□ -0.63
PTCD2-201ENST00000308077 FHAD1B1AJZ9 1412 aa11.1□□□□□ -0.63
PTCD2-201ENST00000308077 CTTNBP2Q8WZ74 1663 aa11.1□□□□□ -0.63
PTCD2-201ENST00000308077 RANGAP1P46060 587 aaPredicted RBP11.07□□□□□ -0.64
PTCD2-201ENST00000308077 MAGI1Q96QZ7 1491 aaPredicted RBP11.07□□□□□ -0.64
PTCD2-201ENST00000308077 CLASP1Q7Z460 1538 aa11.05□□□□□ -0.64
PTCD2-201ENST00000308077 ARHGAP35Q9NRY4 1499 aa11.04□□□□□ -0.64
PTCD2-201ENST00000308077 GRIN2AQ12879 1464 aa11.03□□□□□ -0.64
PTCD2-201ENST00000308077 VPS8Q8N3P4 1428 aa11□□□□□ -0.65
PTCD2-201ENST00000308077 IQGAP2Q13576 1575 aa10.99□□□□□ -0.65
PTCD2-201ENST00000308077 CEP170Q5SW79 1584 aa10.99□□□□□ -0.65
PTCD2-201ENST00000308077 EFCAB5A4FU69 1503 aa10.98□□□□□ -0.65
PTCD2-201ENST00000308077 SAMD9Q5K651 1589 aa10.98□□□□□ -0.65
PTCD2-201ENST00000308077 CHMP7Q8WUX9 453 aaPredicted RBP10.97□□□□□ -0.65
PTCD2-201ENST00000308077 NUP160Q12769 1436 aa10.96□□□□□ -0.66
PTCD2-201ENST00000308077 KIAA0586Q9BVV6 1533 aa10.95□□□□□ -0.66
PTCD2-201ENST00000308077 MED1Q15648 1581 aaPredicted RBP10.95□□□□□ -0.66
PTCD2-201ENST00000308077 FBLN2P98095 1184 aa10.95□□□□□ -0.66
PTCD2-201ENST00000308077 FHOD3Q2V2M9 1422 aa10.95□□□□□ -0.66
PTCD2-201ENST00000308077 ABCC10Q5T3U5 1492 aa10.95□□□□□ -0.66
PTCD2-201ENST00000308077 P3H3Q8IVL6 736 aa10.93□□□□□ -0.66
PTCD2-201ENST00000308077 UGGT2Q9NYU1 1516 aa10.93□□□□□ -0.66
PTCD2-201ENST00000308077 PPARGC1BQ86YN6 1023 aaKnown RBP10.92□□□□□ -0.66
PTCD2-201ENST00000308077 PCF11O94913 1555 aaKnown RBP10.91□□□□□ -0.66
PTCD2-201ENST00000308077 KIAA0556O60303 1618 aa10.89□□□□□ -0.67
PTCD2-201ENST00000308077 DISP1Q96F81 1524 aa10.89□□□□□ -0.67
PTCD2-201ENST00000308077 IQSEC2Q5JU85 1478 aa10.87□□□□□ -0.67
PTCD2-201ENST00000308077 DIP2BQ9P265 1576 aa10.86□□□□□ -0.67
PTCD2-201ENST00000308077 FMN1Q68DA7 1419 aa10.86□□□□□ -0.67
PTCD2-201ENST00000308077 FYCO1Q9BQS8 1478 aa10.85□□□□□ -0.67
PTCD2-201ENST00000308077 CASKIN1Q8WXD9 1431 aa10.85□□□□□ -0.67
PTCD2-201ENST00000308077 TTBK1Q5TCY1 1321 aaPredicted RBP10.84□□□□□ -0.67
PTCD2-201ENST00000308077 LRRIQ1Q96JM4 1722 aa10.84□□□□□ -0.67
PTCD2-201ENST00000308077 SHROOM2Q13796 1616 aa10.84□□□□□ -0.67
PTCD2-201ENST00000308077 CFAP43Q8NDM7 1665 aa10.83□□□□□ -0.68
PTCD2-201ENST00000308077 TIAM1Q13009 1591 aa10.83□□□□□ -0.68
PTCD2-201ENST00000308077 FAM69CQ0P6D2 419 aa10.83□□□□□ -0.68
PTCD2-201ENST00000308077 TRIM26Q12899 539 aaPredicted RBP10.83□□□□□ -0.68
PTCD2-201ENST00000308077 JPH4Q96JJ6 628 aa10.83□□□□□ -0.68
PTCD2-201ENST00000308077 PCGF6Q9BYE7 350 aa10.83□□□□□ -0.68
PTCD2-201ENST00000308077 APLP2Q06481 763 aa10.82□□□□□ -0.68
PTCD2-201ENST00000308077 PCDH10Q9P2E7 1040 aa10.82□□□□□ -0.68
PTCD2-201ENST00000308077 MAP3K1Q13233 1512 aa10.82□□□□□ -0.68
PTCD2-201ENST00000308077 KANK4Q5T7N3 995 aaPredicted RBP10.8□□□□□ -0.68
PTCD2-201ENST00000308077 CARMIL2Q6F5E8 1435 aa10.79□□□□□ -0.68
PTCD2-201ENST00000308077 PRG4Q92954 1404 aaPredicted RBP10.79□□□□□ -0.68
PTCD2-201ENST00000308077 HECW1Q76N89 1606 aa10.79□□□□□ -0.68
PTCD2-201ENST00000308077 PHF23Q9BUL5 403 aaPredicted RBP10.78□□□□□ -0.68
PTCD2-201ENST00000308077 ATP1B4Q9UN42 357 aaPredicted RBP10.77□□□□□ -0.68
PTCD2-201ENST00000308077 RAPGEF6Q8TEU7 1601 aa10.77□□□□□ -0.69
PTCD2-201ENST00000308077 LRRC9Q6ZRR7 1453 aa10.77□□□□□ -0.69
PTCD2-201ENST00000308077 MAPKBP1O60336 1514 aa10.76□□□□□ -0.69
PTCD2-201ENST00000308077 SLC34A2O95436 690 aa10.76□□□□□ -0.69
PTCD2-201ENST00000308077 LTBP4Q8N2S1 1624 aa10.76□□□□□ -0.69
PTCD2-201ENST00000308077 PLB1Q6P1J6 1458 aa10.74□□□□□ -0.69
PTCD2-201ENST00000308077 EPRSP07814 1512 aaKnown RBP10.74□□□□□ -0.69
PTCD2-201ENST00000308077 CDK13Q14004 1512 aaKnown RBP10.74□□□□□ -0.69
PTCD2-201ENST00000308077 NUP153P49790 1475 aaKnown RBP10.74□□□□□ -0.69
PTCD2-201ENST00000308077 CCDC18Q5T9S5 1454 aa10.74□□□□□ -0.69
PTCD2-201ENST00000308077 ABCA8O94911 1581 aa10.73□□□□□ -0.69
PTCD2-201ENST00000308077 TSPOAP1O95153 1857 aa10.73□□□□□ -0.69
PTCD2-201ENST00000308077 MAGI3Q5TCQ9 1506 aa10.72□□□□□ -0.69
PTCD2-201ENST00000308077 PTPRGP23470 1445 aa10.7□□□□□ -0.7
PTCD2-201ENST00000308077 EHBP1L1Q8N3D4 1523 aa10.69□□□□□ -0.7
PTCD2-201ENST00000308077 ARID3CA6NKF2 412 aa10.69□□□□□ -0.7
PTCD2-201ENST00000308077 PTPRMP28827 1452 aa10.68□□□□□ -0.7
PTCD2-201ENST00000308077 MTUS2Q5JR59 1369 aa10.68□□□□□ -0.7
PTCD2-201ENST00000308077 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
PTCD2-201ENST00000308077 RRBP1Q9P2E9 1410 aaKnown RBP10.67□□□□□ -0.7
PTCD2-201ENST00000308077 SUPT6HQ7KZ85 1726 aaKnown RBP10.67□□□□□ -0.7
PTCD2-201ENST00000308077 UACAQ9BZF9 1416 aa10.65□□□□□ -0.7
PTCD2-201ENST00000308077 NCOA2Q15596 1464 aa10.65□□□□□ -0.71
PTCD2-201ENST00000308077 ATP10BO94823 1461 aa10.64□□□□□ -0.71
PTCD2-201ENST00000308077 ABCC2Q92887 1545 aa10.64□□□□□ -0.71
PTCD2-201ENST00000308077 CCNB3Q8WWL7 1395 aa10.62□□□□□ -0.71
PTCD2-201ENST00000308077 ADCY10Q96PN6 1610 aa10.61□□□□□ -0.71
PTCD2-201ENST00000308077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.61□□□□□ -0.71
PTCD2-201ENST00000308077 HNRNPUL2Q1KMD3 747 aaKnown RBP10.61□□□□□ -0.71
PTCD2-201ENST00000308077 UHRF1BP1LA0JNW5 1464 aa10.61□□□□□ -0.71
PTCD2-201ENST00000308077 TROQ12816 1431 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms