RNA–Protein interactions for RNA: ENST00000308077.9

PTCD2-201, Transcript of pentatricopeptide repeat domain 2, humanhuman

TSL 1 (best)

Gene PTCD2, Length 2,195 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2-201ENST00000308077 NISCHQ9Y2I1 1504 aa16.02■□□□□ 0.16
PTCD2-201ENST00000308077 DNAJC5Q9H3Z4 198 aa15.45■□□□□ 0.06
PTCD2-201ENST00000308077 DNAJC5BQ9UF47 199 aa15.04■□□□□ -0
PTCD2-201ENST00000308077 ABCC9O60706 1549 aa14.22□□□□□ -0.13
PTCD2-201ENST00000308077 CCDC180Q9P1Z9 1646 aa14.01□□□□□ -0.17
PTCD2-201ENST00000308077 TRIM41Q8WV44 630 aa13.66□□□□□ -0.22
PTCD2-201ENST00000308077 AEBP2Q6ZN18 517 aaPredicted RBP13.58□□□□□ -0.24
PTCD2-201ENST00000308077 ILDR1Q86SU0 546 aaPredicted RBP13.47□□□□□ -0.25
PTCD2-201ENST00000308077 ZCCHC6Q5VYS8 1495 aaKnown RBP13.46□□□□□ -0.25
PTCD2-201ENST00000308077 CUX2O14529 1486 aa13.37□□□□□ -0.27
PTCD2-201ENST00000308077 DCAF1Q9Y4B6 1507 aa13.24□□□□□ -0.29
PTCD2-201ENST00000308077 DCAF8L2P0C7V8 631 aa13.19□□□□□ -0.3
PTCD2-201ENST00000308077 CECR2Q9BXF3 1484 aa13.13□□□□□ -0.31
PTCD2-201ENST00000308077 MYO15BQ96JP2 1530 aa13.1□□□□□ -0.31
PTCD2-201ENST00000308077 NACADO15069 1562 aa13.04□□□□□ -0.32
PTCD2-201ENST00000308077 SHROOM4Q9ULL8 1493 aa13.01□□□□□ -0.33
PTCD2-201ENST00000308077 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTCD2-201ENST00000308077 RB1CC1Q8TDY2 1594 aa12.95□□□□□ -0.34
PTCD2-201ENST00000308077 CC2D2AQ9P2K1 1620 aa12.89□□□□□ -0.35
PTCD2-201ENST00000308077 SCRIBQ14160 1630 aa12.88□□□□□ -0.35
PTCD2-201ENST00000308077 SOCS7O14512 581 aa12.77□□□□□ -0.37
PTCD2-201ENST00000308077 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
PTCD2-201ENST00000308077 LMTK3Q96Q04 1460 aa12.66□□□□□ -0.38
PTCD2-201ENST00000308077 BICRAQ9NZM4 1560 aa12.6□□□□□ -0.39
PTCD2-201ENST00000308077 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
PTCD2-201ENST00000308077 SUPT5HO00267 1087 aaKnown RBP12.46□□□□□ -0.42
PTCD2-201ENST00000308077 FBXO41Q8TF61 875 aa12.42□□□□□ -0.42
PTCD2-201ENST00000308077 EIF4G1Q04637 1599 aaKnown RBP12.4□□□□□ -0.42
PTCD2-201ENST00000308077 RSF1Q96T23 1441 aaPredicted RBP12.4□□□□□ -0.42
PTCD2-201ENST00000308077 MROH2BQ7Z745 1585 aa12.39□□□□□ -0.43
PTCD2-201ENST00000308077 TRHP20396 242 aaPredicted RBP12.39□□□□□ -0.43
PTCD2-201ENST00000308077 BAZ1AQ9NRL2 1556 aaPredicted RBP12.37□□□□□ -0.43
PTCD2-201ENST00000308077 RIMBP3CA6NJZ7 1639 aa12.35□□□□□ -0.43
PTCD2-201ENST00000308077 RIMBP3BA6NNM3 1639 aa12.35□□□□□ -0.43
PTCD2-201ENST00000308077 RIMBP3Q9UFD9 1639 aa12.35□□□□□ -0.43
PTCD2-201ENST00000308077 SMARCA4P51532 1647 aa12.35□□□□□ -0.43
PTCD2-201ENST00000308077 ILDR2Q71H61 639 aa12.31□□□□□ -0.44
PTCD2-201ENST00000308077 ERCC6L2Q5T890 1561 aa12.31□□□□□ -0.44
PTCD2-201ENST00000308077 WIZO95785 1651 aa12.3□□□□□ -0.44
PTCD2-201ENST00000308077 OSCARQ8IYS5 282 aa12.22□□□□□ -0.45
PTCD2-201ENST00000308077 PEG3Q9GZU2 1588 aa12.19□□□□□ -0.46
PTCD2-201ENST00000308077 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
PTCD2-201ENST00000308077 TOP2AP11388 1531 aaKnown RBP12.15□□□□□ -0.46
PTCD2-201ENST00000308077 THOC2Q8NI27 1593 aaKnown RBP12.14□□□□□ -0.47
PTCD2-201ENST00000308077 ATAD2BQ9ULI0 1458 aa12.14□□□□□ -0.47
PTCD2-201ENST00000308077 SMARCA2P51531 1590 aa12.12□□□□□ -0.47
PTCD2-201ENST00000308077 ARHGEF11O15085 1522 aa12.08□□□□□ -0.48
PTCD2-201ENST00000308077 DISP3Q9P2K9 1392 aa12.07□□□□□ -0.48
PTCD2-201ENST00000308077 BAZ1BQ9UIG0 1483 aaKnown RBP12.06□□□□□ -0.48
PTCD2-201ENST00000308077 NCAPD3P42695 1498 aa12.03□□□□□ -0.48
PTCD2-201ENST00000308077 HMGXB3Q12766 1538 aa12.03□□□□□ -0.48
PTCD2-201ENST00000308077 CCDC88BA6NC98 1476 aa12.01□□□□□ -0.49
PTCD2-201ENST00000308077 CYB5RLQ6IPT4 315 aa11.9□□□□□ -0.5
PTCD2-201ENST00000308077 HECW2Q9P2P5 1572 aa11.89□□□□□ -0.51
PTCD2-201ENST00000308077 KDM4FA0A1W2PPD8 638 aa11.88□□□□□ -0.51
PTCD2-201ENST00000308077 SPATA31D1Q6ZQQ2 1576 aa11.87□□□□□ -0.51
PTCD2-201ENST00000308077 ARAP1Q96P48 1450 aa11.81□□□□□ -0.52
PTCD2-201ENST00000308077 ABCC8Q09428 1581 aa11.76□□□□□ -0.53
PTCD2-201ENST00000308077 CFTRP13569 1480 aa11.76□□□□□ -0.53
PTCD2-201ENST00000308077 PRDM2Q13029 1718 aa11.74□□□□□ -0.53
PTCD2-201ENST00000308077 CADPSQ9ULU8 1353 aa11.71□□□□□ -0.53
PTCD2-201ENST00000308077 NESP48681 1621 aa11.67□□□□□ -0.54
PTCD2-201ENST00000308077 SYNJ2O15056 1496 aa11.67□□□□□ -0.54
PTCD2-201ENST00000308077 WRNQ14191 1432 aaPredicted RBP eCLIP11.66□□□□□ -0.54
PTCD2-201ENST00000308077 SYNJ1O43426 1573 aa11.65□□□□□ -0.54
PTCD2-201ENST00000308077 LAMC3Q9Y6N6 1575 aa11.65□□□□□ -0.55
PTCD2-201ENST00000308077 TOP2BQ02880 1626 aa11.6□□□□□ -0.55
PTCD2-201ENST00000308077 BIVM-ERCC5R4GMW8 1640 aa11.6□□□□□ -0.55
PTCD2-201ENST00000308077 FANCD2Q9BXW9 1451 aa11.6□□□□□ -0.55
PTCD2-201ENST00000308077 CUX1P39880 1505 aa11.59□□□□□ -0.55
PTCD2-201ENST00000308077 KIF21AQ7Z4S6 1674 aa11.57□□□□□ -0.56
PTCD2-201ENST00000308077 WDR62O43379 1518 aa11.55□□□□□ -0.56
PTCD2-201ENST00000308077 PDS5BQ9NTI5 1447 aa11.53□□□□□ -0.56
PTCD2-201ENST00000308077 CEP164Q9UPV0 1460 aa11.53□□□□□ -0.56
PTCD2-201ENST00000308077 SOGA1O94964 1423 aa11.51□□□□□ -0.57
PTCD2-201ENST00000308077 FAM9AQ8IZU1 332 aaPredicted RBP11.51□□□□□ -0.57
PTCD2-201ENST00000308077 DNMBPQ6XZF7 1577 aa11.49□□□□□ -0.57
PTCD2-201ENST00000308077 RUSC2Q8N2Y8 1516 aa11.49□□□□□ -0.57
PTCD2-201ENST00000308077 URB2Q14146 1524 aaKnown RBP11.48□□□□□ -0.57
PTCD2-201ENST00000308077 TOPBP1Q92547 1522 aa11.48□□□□□ -0.57
PTCD2-201ENST00000308077 MRC2Q9UBG0 1479 aa11.47□□□□□ -0.57
PTCD2-201ENST00000308077 FGD5Q6ZNL6 1462 aa11.46□□□□□ -0.58
PTCD2-201ENST00000308077 LOC105371045A0A1W2PR82 267 aa11.45□□□□□ -0.58
PTCD2-201ENST00000308077 EEA1Q15075 1411 aa11.43□□□□□ -0.58
PTCD2-201ENST00000308077 POLA1P09884 1462 aaPredicted RBP11.42□□□□□ -0.58
PTCD2-201ENST00000308077 ADGRL1O94910 1474 aa11.4□□□□□ -0.59
PTCD2-201ENST00000308077 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
PTCD2-201ENST00000308077 CSRNP3Q8WYN3 585 aa11.37□□□□□ -0.59
PTCD2-201ENST00000308077 WDR97A6NE52 1622 aa11.37□□□□□ -0.59
PTCD2-201ENST00000308077 KIF27Q86VH2 1401 aa11.36□□□□□ -0.59
PTCD2-201ENST00000308077 EHMT2Q96KQ7 1210 aa11.35□□□□□ -0.59
PTCD2-201ENST00000308077 ABCA10Q8WWZ4 1543 aa11.35□□□□□ -0.59
PTCD2-201ENST00000308077 IFFO2Q5TF58 517 aa11.34□□□□□ -0.59
PTCD2-201ENST00000308077 KIF21BO75037 1637 aa11.33□□□□□ -0.6
PTCD2-201ENST00000308077 TARBP1Q13395 1621 aaKnown RBP11.33□□□□□ -0.6
PTCD2-201ENST00000308077 KIF13AQ9H1H9 1805 aa11.32□□□□□ -0.6
PTCD2-201ENST00000308077 ABCA5Q8WWZ7 1642 aa11.29□□□□□ -0.6
PTCD2-201ENST00000308077 GOLGA3Q08378 1498 aa11.29□□□□□ -0.6
PTCD2-201ENST00000308077 PRXQ9BXM0 1461 aa11.29□□□□□ -0.6
PTCD2-201ENST00000308077 RAPGEF2Q9Y4G8 1499 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms