RNA–Protein interactions for RNA: ENST00000288840.9

SMAD6-201, Transcript of SMAD family member 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD6, Length 3,835 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-201ENST00000288840 ARAP1Q96P48 1450 aa22.34■■□□□ 1.17
SMAD6-201ENST00000288840 IRX6P78412 446 aaPredicted RBP22.32■■□□□ 1.16
SMAD6-201ENST00000288840 SENP3-EIF4A1A0A087X0R7 540 aa22.32■■□□□ 1.16
SMAD6-201ENST00000288840 SUPT16HQ9Y5B9 1047 aaKnown RBP22.32■■□□□ 1.16
SMAD6-201ENST00000288840 CLSPNQ9HAW4 1339 aa22.31■■□□□ 1.16
SMAD6-201ENST00000288840 HNRNPUQ00839 825 aaKnown RBP eCLIP22.28■■□□□ 1.16
SMAD6-201ENST00000288840 TDRD9Q8NDG6 1382 aaKnown RBP22.27■■□□□ 1.16
SMAD6-201ENST00000288840 FHOD3Q2V2M9 1422 aa22.27■■□□□ 1.16
SMAD6-201ENST00000288840 IGF1RP08069 1367 aa22.27■■□□□ 1.16
SMAD6-201ENST00000288840 ERICH6Q7L0X2 663 aa22.25■■□□□ 1.15
SMAD6-201ENST00000288840 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
SMAD6-201ENST00000288840 SETD5Q9C0A6 1442 aa22.22■■□□□ 1.15
SMAD6-201ENST00000288840 FAM9BQ8IZU0 186 aa22.21■■□□□ 1.15
SMAD6-201ENST00000288840 FOXD1Q16676 465 aa22.2■■□□□ 1.14
SMAD6-201ENST00000288840 PRXQ9BXM0 1461 aa22.18■■□□□ 1.14
SMAD6-201ENST00000288840 CUX1P39880 1505 aa22.17■■□□□ 1.14
SMAD6-201ENST00000288840 ARHGAP35Q9NRY4 1499 aa22.15■■□□□ 1.14
SMAD6-201ENST00000288840 PHLDB1Q86UU1 1377 aa22.14■■□□□ 1.13
SMAD6-201ENST00000288840 NCAPD3P42695 1498 aa22.13■■□□□ 1.13
SMAD6-201ENST00000288840 TOP2BQ02880 1626 aa22.13■■□□□ 1.13
SMAD6-201ENST00000288840 RAD54L2Q9Y4B4 1467 aa22.13■■□□□ 1.13
SMAD6-201ENST00000288840 FHAD1B1AJZ9 1412 aa22.11■■□□□ 1.13
SMAD6-201ENST00000288840 FGD5Q6ZNL6 1462 aa22.1■■□□□ 1.13
SMAD6-201ENST00000288840 PEG3Q9GZU2 1588 aa22.08■■□□□ 1.13
SMAD6-201ENST00000288840 PPP1R15AO75807 674 aaPredicted RBP22.07■■□□□ 1.12
SMAD6-201ENST00000288840 CFTRP13569 1480 aa22.04■■□□□ 1.12
SMAD6-201ENST00000288840 SLC4A1APQ9BWU0 796 aaKnown RBP22.02■■□□□ 1.12
SMAD6-201ENST00000288840 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
SMAD6-201ENST00000288840 DNAJC5BQ9UF47 199 aa22■■□□□ 1.11
SMAD6-201ENST00000288840 KDM2AQ9Y2K7 1162 aa21.99■■□□□ 1.11
SMAD6-201ENST00000288840 SALL2Q9Y467 1007 aaPredicted RBP21.99■■□□□ 1.11
SMAD6-201ENST00000288840 EIF4G2P78344 907 aaKnown RBP eCLIP21.99■■□□□ 1.115e-6■■■■□ 19.7
SMAD6-201ENST00000288840 MYT1LQ9UL68 1186 aa21.99■■□□□ 1.11
SMAD6-201ENST00000288840 MRS2Q9HD23 443 aa21.98■■□□□ 1.11
SMAD6-201ENST00000288840 RRBP1Q9P2E9 1410 aaKnown RBP21.97■■□□□ 1.11
SMAD6-201ENST00000288840 ERICH3Q5RHP9 1530 aa21.97■■□□□ 1.11
SMAD6-201ENST00000288840 NESP48681 1621 aa21.96■■□□□ 1.11
SMAD6-201ENST00000288840 CDK11AQ9UQ88 783 aaPredicted RBP21.93■■□□□ 1.1
SMAD6-201ENST00000288840 HSPA5P11021 654 aaKnown RBP21.92■■□□□ 1.1
SMAD6-201ENST00000288840 LRRC9Q6ZRR7 1453 aa21.92■■□□□ 1.1
SMAD6-201ENST00000288840 CHMP7Q8WUX9 453 aaPredicted RBP21.9■■□□□ 1.1
SMAD6-201ENST00000288840 TSHZ2Q9NRE2 1034 aa21.9■■□□□ 1.1
SMAD6-201ENST00000288840 HMGXB3Q12766 1538 aa21.85■■□□□ 1.09
SMAD6-201ENST00000288840 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.85■■□□□ 1.09
SMAD6-201ENST00000288840 CFDP1Q9UEE9 299 aaPredicted RBP21.83■■□□□ 1.09
SMAD6-201ENST00000288840 FMN1Q68DA7 1419 aa21.83■■□□□ 1.08
SMAD6-201ENST00000288840 L3MBTL2Q969R5 705 aa21.83■■□□□ 1.08
SMAD6-201ENST00000288840 MPHOSPH9Q99550 1183 aa21.82■■□□□ 1.08
SMAD6-201ENST00000288840 TIMELESSQ9UNS1 1208 aa21.8■■□□□ 1.08
SMAD6-201ENST00000288840 RGL3Q3MIN7 710 aa21.77■■□□□ 1.08
SMAD6-201ENST00000288840 WDR97A6NE52 1622 aa21.76■■□□□ 1.07
SMAD6-201ENST00000288840 ZNF644Q9H582 1327 aaPredicted RBP21.76■■□□□ 1.07
SMAD6-201ENST00000288840 CCER2I3L3R5 266 aa21.74■■□□□ 1.07
SMAD6-201ENST00000288840 CCDC18Q5T9S5 1454 aa21.73■■□□□ 1.07
SMAD6-201ENST00000288840 FGD6Q6ZV73 1430 aa21.73■■□□□ 1.07
SMAD6-201ENST00000288840 TIAM1Q13009 1591 aa21.73■■□□□ 1.07
SMAD6-201ENST00000288840 BIVM-ERCC5R4GMW8 1640 aa21.72■■□□□ 1.07
SMAD6-201ENST00000288840 TMC1Q8TDI8 760 aa21.72■■□□□ 1.07
SMAD6-201ENST00000288840 B4GALNT3Q6L9W6 998 aa21.71■■□□□ 1.07
SMAD6-201ENST00000288840 POLA1P09884 1462 aaPredicted RBP21.7■■□□□ 1.06
SMAD6-201ENST00000288840 TSPY4P0CV99 314 aa21.7■■□□□ 1.06
SMAD6-201ENST00000288840 TSPY10P0CW01 314 aa21.7■■□□□ 1.06
SMAD6-201ENST00000288840 RBM19Q9Y4C8 960 aaKnown RBP21.68■■□□□ 1.06
SMAD6-201ENST00000288840 PDS5BQ9NTI5 1447 aa21.67■■□□□ 1.06
SMAD6-201ENST00000288840 CC2D2AQ9P2K1 1620 aa21.66■■□□□ 1.06
SMAD6-201ENST00000288840 GAPVD1Q14C86 1478 aa21.65■■□□□ 1.06
SMAD6-201ENST00000288840 PLEKHD1A6NEE1 506 aa21.65■■□□□ 1.06
SMAD6-201ENST00000288840 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.062e-9■■■■■ 47.9
SMAD6-201ENST00000288840 PKD2Q13563 968 aa21.63■■□□□ 1.05
SMAD6-201ENST00000288840 TOPBP1Q92547 1522 aa21.63■■□□□ 1.05
SMAD6-201ENST00000288840 CASKIN1Q8WXD9 1431 aa21.63■■□□□ 1.05
SMAD6-201ENST00000288840 CARD11Q9BXL7 1154 aa21.61■■□□□ 1.05
SMAD6-201ENST00000288840 ANP32EQ9BTT0 268 aa21.61■■□□□ 1.05
SMAD6-201ENST00000288840 PCF11O94913 1555 aaKnown RBP21.61■■□□□ 1.05
SMAD6-201ENST00000288840 CCDC184Q52MB2 194 aa21.6■■□□□ 1.05
SMAD6-201ENST00000288840 NPM2Q86SE8 214 aaKnown RBP21.6■■□□□ 1.05
SMAD6-201ENST00000288840 NCOA2Q15596 1464 aa21.59■■□□□ 1.05
SMAD6-201ENST00000288840 WASHC2AQ641Q2 1341 aa21.58■■□□□ 1.05
SMAD6-201ENST00000288840 CCDC136Q96JN2 1154 aa21.58■■□□□ 1.05
SMAD6-201ENST00000288840 DCAF11Q8TEB1 546 aa21.57■■□□□ 1.04
SMAD6-201ENST00000288840 MAPKBP1O60336 1514 aa21.57■■□□□ 1.04
SMAD6-201ENST00000288840 MYOM3Q5VTT5 1437 aa21.56■■□□□ 1.04
SMAD6-201ENST00000288840 SENP3Q9H4L4 574 aaPredicted RBP21.54■■□□□ 1.04
SMAD6-201ENST00000288840 UACAQ9BZF9 1416 aa21.54■■□□□ 1.04
SMAD6-201ENST00000288840 FYCO1Q9BQS8 1478 aa21.52■■□□□ 1.04
SMAD6-201ENST00000288840 NBR1Q14596 966 aa21.51■■□□□ 1.03
SMAD6-201ENST00000288840 PTPRKQ15262 1439 aa21.5■■□□□ 1.03
SMAD6-201ENST00000288840 HNRNPMP52272 730 aaKnown RBP eCLIP21.49■■□□□ 1.03
SMAD6-201ENST00000288840 PRKRIP1Q9H875 184 aaPredicted RBP21.49■■□□□ 1.03
SMAD6-201ENST00000288840 NBPF8Q3BBV2 869 aa21.49■■□□□ 1.03
SMAD6-201ENST00000288840 C11orf95C9JLR9 678 aaPredicted RBP21.48■■□□□ 1.03
SMAD6-201ENST00000288840 ERCC6Q03468 1493 aa21.46■■□□□ 1.03
SMAD6-201ENST00000288840 NAIPQ13075 1403 aa21.46■■□□□ 1.03
SMAD6-201ENST00000288840 PPP4R2Q9NY27 417 aa21.45■■□□□ 1.02
SMAD6-201ENST00000288840 CC2D1BQ5T0F9 858 aaKnown RBP21.43■■□□□ 1.02
SMAD6-201ENST00000288840 NUP155O75694 1391 aa21.43■■□□□ 1.02
SMAD6-201ENST00000288840 ABCA10Q8WWZ4 1543 aa21.43■■□□□ 1.02
SMAD6-201ENST00000288840 JPH4Q96JJ6 628 aa21.42■■□□□ 1.02
SMAD6-201ENST00000288840 HFM1A2PYH4 1435 aa21.42■■□□□ 1.02
SMAD6-201ENST00000288840 DNMBPQ6XZF7 1577 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms