RNA–Protein interactions for RNA: ENST00000288840.9

SMAD6-201, Transcript of SMAD family member 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMAD6, Length 3,835 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-201ENST00000288840 NISCHQ9Y2I1 1504 aa30.49■■■□□ 2.47
SMAD6-201ENST00000288840 DCAF8L2P0C7V8 631 aa28.03■■■□□ 2.08
SMAD6-201ENST00000288840 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
SMAD6-201ENST00000288840 SUPT5HO00267 1087 aaKnown RBP27.76■■■□□ 2.03
SMAD6-201ENST00000288840 EHMT2Q96KQ7 1210 aa26.32■■□□□ 1.8
SMAD6-201ENST00000288840 PCGF6Q9BYE7 350 aa26.17■■□□□ 1.78
SMAD6-201ENST00000288840 CHIC1Q5VXU3 224 aa26.01■■□□□ 1.75
SMAD6-201ENST00000288840 FAM9AQ8IZU1 332 aaPredicted RBP25.95■■□□□ 1.74
SMAD6-201ENST00000288840 LOC105371045A0A1W2PR82 267 aa25.85■■□□□ 1.73
SMAD6-201ENST00000288840 ZCCHC6Q5VYS8 1495 aaKnown RBP25.57■■□□□ 1.68
SMAD6-201ENST00000288840 PPARGC1BQ86YN6 1023 aaKnown RBP25.5■■□□□ 1.67
SMAD6-201ENST00000288840 TRIM41Q8WV44 630 aa25.49■■□□□ 1.67
SMAD6-201ENST00000288840 HRCP23327 699 aa25.46■■□□□ 1.67
SMAD6-201ENST00000288840 TTBK1Q5TCY1 1321 aaPredicted RBP25.38■■□□□ 1.65
SMAD6-201ENST00000288840 MYO15BQ96JP2 1530 aa25.34■■□□□ 1.65
SMAD6-201ENST00000288840 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
SMAD6-201ENST00000288840 TRIM26Q12899 539 aaPredicted RBP25.04■■□□□ 1.6
SMAD6-201ENST00000288840 ABCC9O60706 1549 aa24.98■■□□□ 1.59
SMAD6-201ENST00000288840 RANGAP1P46060 587 aaPredicted RBP24.83■■□□□ 1.57
SMAD6-201ENST00000288840 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
SMAD6-201ENST00000288840 CCER1Q8TC90 406 aaPredicted RBP24.69■■□□□ 1.54
SMAD6-201ENST00000288840 UBTFP17480 764 aaKnown RBP24.64■■□□□ 1.53
SMAD6-201ENST00000288840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.56■■□□□ 1.52
SMAD6-201ENST00000288840 ZEB1P37275 1124 aaPredicted RBP24.55■■□□□ 1.52
SMAD6-201ENST00000288840 PABPN1Q86U42 306 aaKnown RBP eCLIP24.52■■□□□ 1.52
SMAD6-201ENST00000288840 RSF1Q96T23 1441 aaPredicted RBP24.49■■□□□ 1.51
SMAD6-201ENST00000288840 DCAF1Q9Y4B6 1507 aa24.41■■□□□ 1.5
SMAD6-201ENST00000288840 APLP2Q06481 763 aa24.31■■□□□ 1.48
SMAD6-201ENST00000288840 CECR2Q9BXF3 1484 aa24.24■■□□□ 1.47
SMAD6-201ENST00000288840 HNRNPUL2Q1KMD3 747 aaKnown RBP24.19■■□□□ 1.46
SMAD6-201ENST00000288840 YTHDC1Q96MU7 727 aaKnown RBP24.14■■□□□ 1.45
SMAD6-201ENST00000288840 RB1CC1Q8TDY2 1594 aa24.1■■□□□ 1.45
SMAD6-201ENST00000288840 MROH2BQ7Z745 1585 aa23.93■■□□□ 1.42
SMAD6-201ENST00000288840 CSRNP3Q8WYN3 585 aa23.91■■□□□ 1.42
SMAD6-201ENST00000288840 DIEXFQ68CQ4 756 aaKnown RBP23.9■■□□□ 1.42
SMAD6-201ENST00000288840 ATP1B4Q9UN42 357 aaPredicted RBP23.88■■□□□ 1.41
SMAD6-201ENST00000288840 ITGAEP38570 1179 aa23.88■■□□□ 1.41
SMAD6-201ENST00000288840 CENPBP07199 599 aaPredicted RBP23.85■■□□□ 1.41
SMAD6-201ENST00000288840 NACADO15069 1562 aa23.78■■□□□ 1.4
SMAD6-201ENST00000288840 WIZO95785 1651 aa23.71■■□□□ 1.39
SMAD6-201ENST00000288840 SCAF1Q9H7N4 1312 aaKnown RBP23.64■■□□□ 1.37
SMAD6-201ENST00000288840 ABCC8Q09428 1581 aa23.62■■□□□ 1.37
SMAD6-201ENST00000288840 SOGA1O94964 1423 aa23.62■■□□□ 1.37
SMAD6-201ENST00000288840 GTF3C3Q9Y5Q9 886 aa23.59■■□□□ 1.37
SMAD6-201ENST00000288840 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
SMAD6-201ENST00000288840 CEP162Q5TB80 1403 aa23.55■■□□□ 1.36
SMAD6-201ENST00000288840 NEUROD1Q13562 356 aa23.53■■□□□ 1.36
SMAD6-201ENST00000288840 PELP1Q8IZL8 1130 aaKnown RBP23.49■■□□□ 1.35
SMAD6-201ENST00000288840 ACIN1Q9UKV3 1341 aaKnown RBP23.47■■□□□ 1.35
SMAD6-201ENST00000288840 ZNF316A6NFI3 1004 aaPredicted RBP23.46■■□□□ 1.35
SMAD6-201ENST00000288840 BAZ1AQ9NRL2 1556 aaPredicted RBP23.46■■□□□ 1.35
SMAD6-201ENST00000288840 RUSC2Q8N2Y8 1516 aa23.37■■□□□ 1.33
SMAD6-201ENST00000288840 P3H3Q8IVL6 736 aa23.36■■□□□ 1.33
SMAD6-201ENST00000288840 WRNQ14191 1432 aaPredicted RBP eCLIP23.33■■□□□ 1.331e-6■■■■■ 58.5
SMAD6-201ENST00000288840 TNIKQ9UKE5 1360 aa23.29■■□□□ 1.32
SMAD6-201ENST00000288840 CLIP1P30622 1438 aa23.27■■□□□ 1.32
SMAD6-201ENST00000288840 FAM50AQ14320 339 aaKnown RBP23.25■■□□□ 1.31
SMAD6-201ENST00000288840 MIER1Q8N108 512 aa23.24■■□□□ 1.31
SMAD6-201ENST00000288840 GOLGA3Q08378 1498 aa23.19■■□□□ 1.3
SMAD6-201ENST00000288840 TOP2AP11388 1531 aaKnown RBP23.12■■□□□ 1.29
SMAD6-201ENST00000288840 BAZ1BQ9UIG0 1483 aaKnown RBP23.08■■□□□ 1.29
SMAD6-201ENST00000288840 EEA1Q15075 1411 aa23.07■■□□□ 1.28
SMAD6-201ENST00000288840 SMARCA4P51532 1647 aa23.06■■□□□ 1.28
SMAD6-201ENST00000288840 SMARCA2P51531 1590 aa22.99■■□□□ 1.27
SMAD6-201ENST00000288840 CEP164Q9UPV0 1460 aa22.99■■□□□ 1.27
SMAD6-201ENST00000288840 KANK4Q5T7N3 995 aaPredicted RBP22.98■■□□□ 1.27
SMAD6-201ENST00000288840 ARID3CA6NKF2 412 aa22.97■■□□□ 1.27
SMAD6-201ENST00000288840 CNGB1Q14028 1251 aaPredicted RBP22.96■■□□□ 1.27
SMAD6-201ENST00000288840 HIRIP3Q9BW71 556 aaPredicted RBP22.95■■□□□ 1.26
SMAD6-201ENST00000288840 BCANQ96GW7 911 aa22.93■■□□□ 1.26
SMAD6-201ENST00000288840 RAPGEF2Q9Y4G8 1499 aa22.89■■□□□ 1.26
SMAD6-201ENST00000288840 VPS8Q8N3P4 1428 aa22.82■■□□□ 1.24
SMAD6-201ENST00000288840 DDX10Q13206 875 aaKnown RBP22.8■■□□□ 1.24
SMAD6-201ENST00000288840 ATAD2BQ9ULI0 1458 aa22.8■■□□□ 1.24
SMAD6-201ENST00000288840 POLR3GLQ9BT43 218 aa22.73■■□□□ 1.23
SMAD6-201ENST00000288840 SIN3AQ96ST3 1273 aa22.72■■□□□ 1.23
SMAD6-201ENST00000288840 NEFLP07196 543 aa22.71■■□□□ 1.23
SMAD6-201ENST00000288840 TRIM52Q96A61 297 aa22.71■■□□□ 1.23
SMAD6-201ENST00000288840 KIF27Q86VH2 1401 aa22.69■■□□□ 1.22
SMAD6-201ENST00000288840 MYT1Q01538 1121 aa22.64■■□□□ 1.21
SMAD6-201ENST00000288840 SYNJ1O43426 1573 aa22.63■■□□□ 1.21
SMAD6-201ENST00000288840 CHIC2Q9UKJ5 165 aa22.63■■□□□ 1.21
SMAD6-201ENST00000288840 CUX2O14529 1486 aa22.57■■□□□ 1.2
SMAD6-201ENST00000288840 CCNB3Q8WWL7 1395 aa22.55■■□□□ 1.2
SMAD6-201ENST00000288840 ANP32CO43423 234 aa22.52■■□□□ 1.2
SMAD6-201ENST00000288840 KCNH8Q96L42 1107 aa22.5■■□□□ 1.19
SMAD6-201ENST00000288840 CARMIL1Q5VZK9 1371 aa22.49■■□□□ 1.19
SMAD6-201ENST00000288840 FKBP8Q14318 412 aa22.48■■□□□ 1.19
SMAD6-201ENST00000288840 FBLN2P98095 1184 aa22.47■■□□□ 1.19
SMAD6-201ENST00000288840 ZNF326Q5BKZ1 582 aaKnown RBP22.47■■□□□ 1.19
SMAD6-201ENST00000288840 DHX57Q6P158 1386 aaKnown RBP22.46■■□□□ 1.19
SMAD6-201ENST00000288840 BICRAQ9NZM4 1560 aa22.46■■□□□ 1.19
SMAD6-201ENST00000288840 RRP7BPQ9NSQ0 103 aa22.45■■□□□ 1.18
SMAD6-201ENST00000288840 KIF21BO75037 1637 aa22.44■■□□□ 1.18
SMAD6-201ENST00000288840 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
SMAD6-201ENST00000288840 TONSLQ96HA7 1378 aa22.41■■□□□ 1.18
SMAD6-201ENST00000288840 MTUS2Q5JR59 1369 aa22.4■■□□□ 1.18
SMAD6-201ENST00000288840 RAB3GAP2Q9H2M9 1393 aa22.4■■□□□ 1.18
SMAD6-201ENST00000288840 UNC13AQ9UPW8 1703 aa22.39■■□□□ 1.18
SMAD6-201ENST00000288840 ZNF777Q9ULD5 760 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms