RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 CHD1O14646 1710 aa30.32■■■□□ 2.44
PDLIM3-202ENST00000284770 NUP160Q12769 1436 aa30.31■■■□□ 2.44
PDLIM3-202ENST00000284770 CEP170Q5SW79 1584 aa30.28■■■□□ 2.44
PDLIM3-202ENST00000284770 KIAA0586Q9BVV6 1533 aa30.26■■■□□ 2.43
PDLIM3-202ENST00000284770 RANGAP1P46060 587 aaPredicted RBP30.25■■■□□ 2.43
PDLIM3-202ENST00000284770 CLIP1P30622 1438 aa30.24■■■□□ 2.43
PDLIM3-202ENST00000284770 IQGAP2Q13576 1575 aa30.21■■■□□ 2.43
PDLIM3-202ENST00000284770 ARHGAP35Q9NRY4 1499 aa30.11■■■□□ 2.41
PDLIM3-202ENST00000284770 UGGT2Q9NYU1 1516 aa30.08■■■□□ 2.41
PDLIM3-202ENST00000284770 EFCAB5A4FU69 1503 aa30.07■■■□□ 2.4
PDLIM3-202ENST00000284770 JPH4Q96JJ6 628 aa30.06■■■□□ 2.4
PDLIM3-202ENST00000284770 OSCARQ8IYS5 282 aa30.05■■■□□ 2.4
PDLIM3-202ENST00000284770 CLASP1Q7Z460 1538 aa30.03■■■□□ 2.4
PDLIM3-202ENST00000284770 SAMD9Q5K651 1589 aa30.02■■■□□ 2.4
PDLIM3-202ENST00000284770 ARAP1Q96P48 1450 aa30■■■□□ 2.39
PDLIM3-202ENST00000284770 P3H3Q8IVL6 736 aa29.98■■■□□ 2.39
PDLIM3-202ENST00000284770 DISP1Q96F81 1524 aa29.96■■■□□ 2.39
PDLIM3-202ENST00000284770 SHROOM2Q13796 1616 aa29.94■■■□□ 2.38
PDLIM3-202ENST00000284770 FHOD3Q2V2M9 1422 aa29.93■■■□□ 2.38
PDLIM3-202ENST00000284770 CARMIL2Q6F5E8 1435 aa29.91■■■□□ 2.38
PDLIM3-202ENST00000284770 KIAA0556O60303 1618 aa29.9■■■□□ 2.38
PDLIM3-202ENST00000284770 VPS8Q8N3P4 1428 aa29.9■■■□□ 2.38
PDLIM3-202ENST00000284770 PRG4Q92954 1404 aaPredicted RBP29.9■■■□□ 2.38
PDLIM3-202ENST00000284770 FMN1Q68DA7 1419 aa29.81■■■□□ 2.36
PDLIM3-202ENST00000284770 ERCC6L2Q5T890 1561 aa29.73■■■□□ 2.35
PDLIM3-202ENST00000284770 TTBK1Q5TCY1 1321 aaPredicted RBP29.69■■■□□ 2.34
PDLIM3-202ENST00000284770 CASKIN1Q8WXD9 1431 aa29.68■■■□□ 2.34
PDLIM3-202ENST00000284770 PTPRGP23470 1445 aa29.67■■■□□ 2.34
PDLIM3-202ENST00000284770 PCF11O94913 1555 aaKnown RBP29.66■■■□□ 2.34
PDLIM3-202ENST00000284770 FYCO1Q9BQS8 1478 aa29.64■■■□□ 2.34
PDLIM3-202ENST00000284770 APLP2Q06481 763 aa29.59■■■□□ 2.33
PDLIM3-202ENST00000284770 ATP1B4Q9UN42 357 aaPredicted RBP29.59■■■□□ 2.33
PDLIM3-202ENST00000284770 PLB1Q6P1J6 1458 aa29.56■■■□□ 2.32
PDLIM3-202ENST00000284770 RAPGEF6Q8TEU7 1601 aa29.54■■■□□ 2.32
PDLIM3-202ENST00000284770 HECW1Q76N89 1606 aa29.53■■■□□ 2.32
PDLIM3-202ENST00000284770 ABCA8O94911 1581 aa29.52■■■□□ 2.32
PDLIM3-202ENST00000284770 ARHGEF11O15085 1522 aa29.51■■■□□ 2.31
PDLIM3-202ENST00000284770 MAP3K1Q13233 1512 aa29.49■■■□□ 2.31
PDLIM3-202ENST00000284770 UACAQ9BZF9 1416 aa29.49■■■□□ 2.31
PDLIM3-202ENST00000284770 NUP153P49790 1475 aaKnown RBP29.48■■■□□ 2.31
PDLIM3-202ENST00000284770 TIAM1Q13009 1591 aa29.45■■■□□ 2.31
PDLIM3-202ENST00000284770 EPRSP07814 1512 aaKnown RBP29.45■■■□□ 2.3
PDLIM3-202ENST00000284770 CCDC18Q5T9S5 1454 aa29.44■■■□□ 2.3
PDLIM3-202ENST00000284770 PPARGC1BQ86YN6 1023 aaKnown RBP29.43■■■□□ 2.3
PDLIM3-202ENST00000284770 LRRIQ1Q96JM4 1722 aa29.43■■■□□ 2.3
PDLIM3-202ENST00000284770 CFAP43Q8NDM7 1665 aa29.4■■■□□ 2.3
PDLIM3-202ENST00000284770 ABCC2Q92887 1545 aa29.4■■■□□ 2.3
PDLIM3-202ENST00000284770 KANK4Q5T7N3 995 aaPredicted RBP29.39■■■□□ 2.3
PDLIM3-202ENST00000284770 UHRF1BP1LA0JNW5 1464 aa29.39■■■□□ 2.3
PDLIM3-202ENST00000284770 RIMBP3CA6NJZ7 1639 aa29.38■■■□□ 2.29
PDLIM3-202ENST00000284770 RIMBP3BA6NNM3 1639 aa29.38■■■□□ 2.29
PDLIM3-202ENST00000284770 RIMBP3Q9UFD9 1639 aa29.38■■■□□ 2.29
PDLIM3-202ENST00000284770 ARID3CA6NKF2 412 aa29.38■■■□□ 2.29
PDLIM3-202ENST00000284770 CDK13Q14004 1512 aaKnown RBP29.36■■■□□ 2.29
PDLIM3-202ENST00000284770 LRRC9Q6ZRR7 1453 aa29.34■■■□□ 2.29
PDLIM3-202ENST00000284770 ATP10BO94823 1461 aa29.33■■■□□ 2.29
PDLIM3-202ENST00000284770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.31■■■□□ 2.28
PDLIM3-202ENST00000284770 HNRNPUL2Q1KMD3 747 aaKnown RBP29.31■■■□□ 2.28
PDLIM3-202ENST00000284770 ADCY10Q96PN6 1610 aa29.28■■■□□ 2.28
PDLIM3-202ENST00000284770 CDK11AQ9UQ88 783 aaPredicted RBP29.27■■■□□ 2.28
PDLIM3-202ENST00000284770 MTUS2Q5JR59 1369 aa29.26■■■□□ 2.27
PDLIM3-202ENST00000284770 KDM5BQ9UGL1 1544 aa29.25■■■□□ 2.27
PDLIM3-202ENST00000284770 CYB5RLQ6IPT4 315 aa29.24■■■□□ 2.27
PDLIM3-202ENST00000284770 MAGI3Q5TCQ9 1506 aa29.23■■■□□ 2.27
PDLIM3-202ENST00000284770 EHBP1L1Q8N3D4 1523 aa29.2■■■□□ 2.27
PDLIM3-202ENST00000284770 PLEKHD1A6NEE1 506 aa29.18■■■□□ 2.26
PDLIM3-202ENST00000284770 ZCCHC11Q5TAX3 1644 aaKnown RBP29.17■■■□□ 2.26
PDLIM3-202ENST00000284770 TROQ12816 1431 aaPredicted RBP29.15■■■□□ 2.26
PDLIM3-202ENST00000284770 NPM1P06748 294 aaKnown RBP eCLIP29.12■■■□□ 2.25
PDLIM3-202ENST00000284770 TRIM26Q12899 539 aaPredicted RBP29.09■■■□□ 2.25
PDLIM3-202ENST00000284770 SUPT6HQ7KZ85 1726 aaKnown RBP29.08■■■□□ 2.25
PDLIM3-202ENST00000284770 NCOA2Q15596 1464 aa29.07■■■□□ 2.24
PDLIM3-202ENST00000284770 DNAJC5Q9H3Z4 198 aa29.07■■■□□ 2.24
PDLIM3-202ENST00000284770 PHLDB1Q86UU1 1377 aa29.03■■■□□ 2.24
PDLIM3-202ENST00000284770 PCGF6Q9BYE7 350 aa28.99■■■□□ 2.23
PDLIM3-202ENST00000284770 KIF14Q15058 1648 aa28.99■■■□□ 2.23
PDLIM3-202ENST00000284770 ASXL2Q76L83 1435 aa28.99■■■□□ 2.23
PDLIM3-202ENST00000284770 WDR7Q9Y4E6 1490 aa28.98■■■□□ 2.23
PDLIM3-202ENST00000284770 KCNH8Q96L42 1107 aa28.94■■■□□ 2.22
PDLIM3-202ENST00000284770 MYOM3Q5VTT5 1437 aa28.93■■■□□ 2.22
PDLIM3-202ENST00000284770 ABCC10Q5T3U5 1492 aa28.92■■■□□ 2.22
PDLIM3-202ENST00000284770 RRBP1Q9P2E9 1410 aaKnown RBP28.92■■■□□ 2.22
PDLIM3-202ENST00000284770 CCNB3Q8WWL7 1395 aa28.91■■■□□ 2.22
PDLIM3-202ENST00000284770 MAPKBP1O60336 1514 aa28.9■■■□□ 2.22
PDLIM3-202ENST00000284770 FGD6Q6ZV73 1430 aa28.87■■■□□ 2.21
PDLIM3-202ENST00000284770 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.87■■■□□ 2.21
PDLIM3-202ENST00000284770 GPATCH8Q9UKJ3 1502 aaKnown RBP28.86■■■□□ 2.21
PDLIM3-202ENST00000284770 MIA2Q96PC5 1412 aa28.83■■■□□ 2.21
PDLIM3-202ENST00000284770 TTC37Q6PGP7 1564 aa28.81■■■□□ 2.2
PDLIM3-202ENST00000284770 ITSN2Q9NZM3 1697 aa28.79■■■□□ 2.2
PDLIM3-202ENST00000284770 CFDP1Q9UEE9 299 aaPredicted RBP28.78■■■□□ 2.2
PDLIM3-202ENST00000284770 CDC42BPAQ5VT25 1732 aa28.78■■■□□ 2.2
PDLIM3-202ENST00000284770 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.77■■■□□ 2.2
PDLIM3-202ENST00000284770 ABCA9Q8IUA7 1624 aa28.75■■■□□ 2.19
PDLIM3-202ENST00000284770 FAM50AQ14320 339 aaKnown RBP28.75■■■□□ 2.19
PDLIM3-202ENST00000284770 PTPN23Q9H3S7 1636 aa28.74■■■□□ 2.19
PDLIM3-202ENST00000284770 TCOF1Q13428 1488 aaKnown RBP28.73■■■□□ 2.19
PDLIM3-202ENST00000284770 PLCH2O75038 1416 aa28.72■■■□□ 2.19
PDLIM3-202ENST00000284770 PREX2Q70Z35 1606 aa28.72■■■□□ 2.19
PDLIM3-202ENST00000284770 MYO5CQ9NQX4 1742 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms