RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 RIMBP3BA6NNM3 1639 aa16.27■□□□□ 0.19
UPF3B-201ENST00000276201 RIMBP3Q9UFD9 1639 aa16.27■□□□□ 0.19
UPF3B-201ENST00000276201 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
UPF3B-201ENST00000276201 CARMIL1Q5VZK9 1371 aa16.21■□□□□ 0.19
UPF3B-201ENST00000276201 SHROOM2Q13796 1616 aa16.15■□□□□ 0.18
UPF3B-201ENST00000276201 ARAP1Q96P48 1450 aa16.15■□□□□ 0.18
UPF3B-201ENST00000276201 RAPGEF2Q9Y4G8 1499 aa16.13■□□□□ 0.17
UPF3B-201ENST00000276201 ERCC6L2Q5T890 1561 aa16.11■□□□□ 0.17
UPF3B-201ENST00000276201 KIAA0586Q9BVV6 1533 aa16.11■□□□□ 0.17
UPF3B-201ENST00000276201 PRXQ9BXM0 1461 aa16.09■□□□□ 0.17
UPF3B-201ENST00000276201 CYB5RLQ6IPT4 315 aa16.08■□□□□ 0.16
UPF3B-201ENST00000276201 EEA1Q15075 1411 aa16.08■□□□□ 0.16
UPF3B-201ENST00000276201 JPH4Q96JJ6 628 aa16.07■□□□□ 0.16
UPF3B-201ENST00000276201 PRG4Q92954 1404 aaPredicted RBP16.06■□□□□ 0.16
UPF3B-201ENST00000276201 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
UPF3B-201ENST00000276201 IQGAP2Q13576 1575 aa16.03■□□□□ 0.16
UPF3B-201ENST00000276201 FAM9AQ8IZU1 332 aaPredicted RBP16.01■□□□□ 0.15
UPF3B-201ENST00000276201 CTTNBP2Q8WZ74 1663 aa15.98■□□□□ 0.15
UPF3B-201ENST00000276201 UGGT2Q9NYU1 1516 aa15.95■□□□□ 0.14
UPF3B-201ENST00000276201 KIF21BO75037 1637 aa15.94■□□□□ 0.14
UPF3B-201ENST00000276201 DISP1Q96F81 1524 aa15.93■□□□□ 0.14
UPF3B-201ENST00000276201 CARMIL2Q6F5E8 1435 aa15.91■□□□□ 0.14
UPF3B-201ENST00000276201 SCAF1Q9H7N4 1312 aaKnown RBP15.91■□□□□ 0.14
UPF3B-201ENST00000276201 KIAA0556O60303 1618 aa15.88■□□□□ 0.13
UPF3B-201ENST00000276201 TNIKQ9UKE5 1360 aa15.87■□□□□ 0.13
UPF3B-201ENST00000276201 PTPRGP23470 1445 aa15.86■□□□□ 0.13
UPF3B-201ENST00000276201 GOLGA3Q08378 1498 aa15.84■□□□□ 0.13
UPF3B-201ENST00000276201 ADCY10Q96PN6 1610 aa15.84■□□□□ 0.13
UPF3B-201ENST00000276201 TTBK1Q5TCY1 1321 aaPredicted RBP15.83■□□□□ 0.12
UPF3B-201ENST00000276201 EHMT2Q96KQ7 1210 aa15.81■□□□□ 0.12
UPF3B-201ENST00000276201 SAMD9Q5K651 1589 aa15.79■□□□□ 0.12
UPF3B-201ENST00000276201 UBTFP17480 764 aaKnown RBP15.76■□□□□ 0.11
UPF3B-201ENST00000276201 UACAQ9BZF9 1416 aa15.76■□□□□ 0.11
UPF3B-201ENST00000276201 UHRF1BP1LA0JNW5 1464 aa15.76■□□□□ 0.11
UPF3B-201ENST00000276201 ABCC2Q92887 1545 aa15.75■□□□□ 0.11
UPF3B-201ENST00000276201 RANGAP1P46060 587 aaPredicted RBP15.74■□□□□ 0.11
UPF3B-201ENST00000276201 MYT1Q01538 1121 aa15.74■□□□□ 0.11
UPF3B-201ENST00000276201 P3H3Q8IVL6 736 aa15.74■□□□□ 0.11
UPF3B-201ENST00000276201 TRHP20396 242 aaPredicted RBP15.73■□□□□ 0.11
UPF3B-201ENST00000276201 PLB1Q6P1J6 1458 aa15.72■□□□□ 0.11
UPF3B-201ENST00000276201 ABCA8O94911 1581 aa15.71■□□□□ 0.11
UPF3B-201ENST00000276201 ACIN1Q9UKV3 1341 aaKnown RBP15.71■□□□□ 0.11
UPF3B-201ENST00000276201 MAPKBP1O60336 1514 aa15.71■□□□□ 0.11
UPF3B-201ENST00000276201 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.11
UPF3B-201ENST00000276201 EFCAB5A4FU69 1503 aa15.71■□□□□ 0.11
UPF3B-201ENST00000276201 FHOD3Q2V2M9 1422 aa15.7■□□□□ 0.1
UPF3B-201ENST00000276201 KDM5BQ9UGL1 1544 aa15.68■□□□□ 0.1
UPF3B-201ENST00000276201 ZCCHC11Q5TAX3 1644 aaKnown RBP15.66■□□□□ 0.1
UPF3B-201ENST00000276201 ARHGAP35Q9NRY4 1499 aa15.65■□□□□ 0.1
UPF3B-201ENST00000276201 KIF13AQ9H1H9 1805 aa15.64■□□□□ 0.09
UPF3B-201ENST00000276201 ABCC10Q5T3U5 1492 aa15.63■□□□□ 0.09
UPF3B-201ENST00000276201 ASXL2Q76L83 1435 aa15.63■□□□□ 0.09
UPF3B-201ENST00000276201 DIP2BQ9P265 1576 aa15.62■□□□□ 0.09
UPF3B-201ENST00000276201 RAPGEF6Q8TEU7 1601 aa15.62■□□□□ 0.09
UPF3B-201ENST00000276201 CENPBP07199 599 aaPredicted RBP15.59■□□□□ 0.09
UPF3B-201ENST00000276201 FAM69CQ0P6D2 419 aa15.58■□□□□ 0.08
UPF3B-201ENST00000276201 NUP153P49790 1475 aaKnown RBP15.58■□□□□ 0.08
UPF3B-201ENST00000276201 ATP10BO94823 1461 aa15.57■□□□□ 0.08
UPF3B-201ENST00000276201 ARID3CA6NKF2 412 aa15.57■□□□□ 0.08
UPF3B-201ENST00000276201 WDR7Q9Y4E6 1490 aa15.56■□□□□ 0.08
UPF3B-201ENST00000276201 CLIP1P30622 1438 aa15.55■□□□□ 0.08
UPF3B-201ENST00000276201 FMN1Q68DA7 1419 aa15.55■□□□□ 0.08
UPF3B-201ENST00000276201 NEUROD1Q13562 356 aa15.55■□□□□ 0.08
UPF3B-201ENST00000276201 CCER1Q8TC90 406 aaPredicted RBP15.55■□□□□ 0.08
UPF3B-201ENST00000276201 EPRSP07814 1512 aaKnown RBP15.54■□□□□ 0.08
UPF3B-201ENST00000276201 GLI2P10070 1586 aa15.53■□□□□ 0.08
UPF3B-201ENST00000276201 DIEXFQ68CQ4 756 aaKnown RBP15.51■□□□□ 0.07
UPF3B-201ENST00000276201 CEP162Q5TB80 1403 aa15.5■□□□□ 0.07
UPF3B-201ENST00000276201 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.49■□□□□ 0.07
UPF3B-201ENST00000276201 HECW1Q76N89 1606 aa15.49■□□□□ 0.07
UPF3B-201ENST00000276201 CDK13Q14004 1512 aaKnown RBP15.48■□□□□ 0.07
UPF3B-201ENST00000276201 TSPOAP1O95153 1857 aa15.47■□□□□ 0.07
UPF3B-201ENST00000276201 PCF11O94913 1555 aaKnown RBP15.47■□□□□ 0.07
UPF3B-201ENST00000276201 MAP3K4Q9Y6R4 1608 aa15.47■□□□□ 0.07
UPF3B-201ENST00000276201 HNRNPUL2Q1KMD3 747 aaKnown RBP15.46■□□□□ 0.07
UPF3B-201ENST00000276201 PPRC1Q5VV67 1664 aaKnown RBP15.46■□□□□ 0.07
UPF3B-201ENST00000276201 KCNH8Q96L42 1107 aa15.46■□□□□ 0.06
UPF3B-201ENST00000276201 CASKIN1Q8WXD9 1431 aa15.45■□□□□ 0.06
UPF3B-201ENST00000276201 ATP1B4Q9UN42 357 aaPredicted RBP15.44■□□□□ 0.06
UPF3B-201ENST00000276201 LRRIQ1Q96JM4 1722 aa15.44■□□□□ 0.06
UPF3B-201ENST00000276201 GTF3C3Q9Y5Q9 886 aa15.42■□□□□ 0.06
UPF3B-201ENST00000276201 CFAP43Q8NDM7 1665 aa15.42■□□□□ 0.06
UPF3B-201ENST00000276201 FYCO1Q9BQS8 1478 aa15.42■□□□□ 0.06
UPF3B-201ENST00000276201 PLEKHD1A6NEE1 506 aa15.4■□□□□ 0.06
UPF3B-201ENST00000276201 ABCA9Q8IUA7 1624 aa15.4■□□□□ 0.06
UPF3B-201ENST00000276201 CD109Q6YHK3 1445 aa15.39■□□□□ 0.05
UPF3B-201ENST00000276201 ZNF316A6NFI3 1004 aaPredicted RBP15.38■□□□□ 0.05
UPF3B-201ENST00000276201 CCDC18Q5T9S5 1454 aa15.37■□□□□ 0.05
UPF3B-201ENST00000276201 MAGI3Q5TCQ9 1506 aa15.37■□□□□ 0.05
UPF3B-201ENST00000276201 TEX14Q8IWB6 1497 aa15.37■□□□□ 0.05
UPF3B-201ENST00000276201 KDM6BO15054 1643 aa15.35■□□□□ 0.05
UPF3B-201ENST00000276201 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.34■□□□□ 0.05
UPF3B-201ENST00000276201 TTC37Q6PGP7 1564 aa15.34■□□□□ 0.05
UPF3B-201ENST00000276201 TROQ12816 1431 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-201ENST00000276201 CDK11AQ9UQ88 783 aaPredicted RBP15.33■□□□□ 0.04
UPF3B-201ENST00000276201 KIF14Q15058 1648 aa15.32■□□□□ 0.04
UPF3B-201ENST00000276201 COL17A1Q9UMD9 1497 aaPredicted RBP15.31■□□□□ 0.04
UPF3B-201ENST00000276201 VPS8Q8N3P4 1428 aa15.3■□□□□ 0.04
UPF3B-201ENST00000276201 NEO1Q92859 1461 aa15.26■□□□□ 0.03
UPF3B-201ENST00000276201 ARAP3Q8WWN8 1544 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms