RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 NISCHQ9Y2I1 1504 aa23.3■■□□□ 1.32
UPF3B-201ENST00000276201 CCDC180Q9P1Z9 1646 aa20.7■□□□□ 0.9
UPF3B-201ENST00000276201 ABCC9O60706 1549 aa20.23■□□□□ 0.83
UPF3B-201ENST00000276201 RB1CC1Q8TDY2 1594 aa19.46■□□□□ 0.71
UPF3B-201ENST00000276201 NACADO15069 1562 aa19.44■□□□□ 0.7
UPF3B-201ENST00000276201 ZCCHC6Q5VYS8 1495 aaKnown RBP19.43■□□□□ 0.7
UPF3B-201ENST00000276201 DCAF8L2P0C7V8 631 aa19.41■□□□□ 0.7
UPF3B-201ENST00000276201 MYO15BQ96JP2 1530 aa19.34■□□□□ 0.69
UPF3B-201ENST00000276201 DCAF1Q9Y4B6 1507 aa19.28■□□□□ 0.68
UPF3B-201ENST00000276201 UNC13AQ9UPW8 1703 aa19.04■□□□□ 0.64
UPF3B-201ENST00000276201 BICRAQ9NZM4 1560 aa18.9■□□□□ 0.62
UPF3B-201ENST00000276201 SCRIBQ14160 1630 aa18.9■□□□□ 0.62
UPF3B-201ENST00000276201 PABPN1Q86U42 306 aaKnown RBP eCLIP18.9■□□□□ 0.62
UPF3B-201ENST00000276201 SHROOM4Q9ULL8 1493 aa18.68■□□□□ 0.58
UPF3B-201ENST00000276201 DNAJC5BQ9UF47 199 aa18.55■□□□□ 0.56
UPF3B-201ENST00000276201 EIF4G1Q04637 1599 aaKnown RBP18.38■□□□□ 0.53
UPF3B-201ENST00000276201 CC2D2AQ9P2K1 1620 aa18.3■□□□□ 0.52
UPF3B-201ENST00000276201 CECR2Q9BXF3 1484 aa18.16■□□□□ 0.5
UPF3B-201ENST00000276201 SMARCA4P51532 1647 aa18.08■□□□□ 0.49
UPF3B-201ENST00000276201 BAZ1AQ9NRL2 1556 aaPredicted RBP18.05■□□□□ 0.48
UPF3B-201ENST00000276201 MROH2BQ7Z745 1585 aa17.97■□□□□ 0.47
UPF3B-201ENST00000276201 ATAD2BQ9ULI0 1458 aa17.97■□□□□ 0.47
UPF3B-201ENST00000276201 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
UPF3B-201ENST00000276201 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
UPF3B-201ENST00000276201 PEG3Q9GZU2 1588 aa17.9■□□□□ 0.46
UPF3B-201ENST00000276201 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
UPF3B-201ENST00000276201 BAZ1BQ9UIG0 1483 aaKnown RBP17.81■□□□□ 0.44
UPF3B-201ENST00000276201 WIZO95785 1651 aa17.78■□□□□ 0.44
UPF3B-201ENST00000276201 RSF1Q96T23 1441 aaPredicted RBP17.77■□□□□ 0.44
UPF3B-201ENST00000276201 TOP2AP11388 1531 aaKnown RBP17.59■□□□□ 0.41
UPF3B-201ENST00000276201 NESP48681 1621 aa17.53■□□□□ 0.4
UPF3B-201ENST00000276201 LAMC3Q9Y6N6 1575 aa17.46■□□□□ 0.39
UPF3B-201ENST00000276201 CADPSQ9ULU8 1353 aa17.42■□□□□ 0.38
UPF3B-201ENST00000276201 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
UPF3B-201ENST00000276201 CCDC88BA6NC98 1476 aa17.37■□□□□ 0.37
UPF3B-201ENST00000276201 CFTRP13569 1480 aa17.33■□□□□ 0.37
UPF3B-201ENST00000276201 PDS5BQ9NTI5 1447 aa17.33■□□□□ 0.36
UPF3B-201ENST00000276201 KIF21AQ7Z4S6 1674 aa17.32■□□□□ 0.36
UPF3B-201ENST00000276201 SUPT5HO00267 1087 aaKnown RBP17.31■□□□□ 0.36
UPF3B-201ENST00000276201 THOC2Q8NI27 1593 aaKnown RBP17.26■□□□□ 0.35
UPF3B-201ENST00000276201 FANCD2Q9BXW9 1451 aa17.23■□□□□ 0.35
UPF3B-201ENST00000276201 CUX2O14529 1486 aa17.23■□□□□ 0.35
UPF3B-201ENST00000276201 PRDM2Q13029 1718 aa17.21■□□□□ 0.35
UPF3B-201ENST00000276201 CEP164Q9UPV0 1460 aa17.2■□□□□ 0.34
UPF3B-201ENST00000276201 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
UPF3B-201ENST00000276201 WDR62O43379 1518 aa17.13■□□□□ 0.33
UPF3B-201ENST00000276201 HRCP23327 699 aa17.12■□□□□ 0.33
UPF3B-201ENST00000276201 URB2Q14146 1524 aaKnown RBP17.07■□□□□ 0.32
UPF3B-201ENST00000276201 TOPBP1Q92547 1522 aa16.97■□□□□ 0.31
UPF3B-201ENST00000276201 CHIC1Q5VXU3 224 aa16.95■□□□□ 0.3
UPF3B-201ENST00000276201 DNMBPQ6XZF7 1577 aa16.94■□□□□ 0.3
UPF3B-201ENST00000276201 ABCC8Q09428 1581 aa16.93■□□□□ 0.3
UPF3B-201ENST00000276201 CUX1P39880 1505 aa16.86■□□□□ 0.29
UPF3B-201ENST00000276201 IFT140Q96RY7 1462 aa16.84■□□□□ 0.29
UPF3B-201ENST00000276201 POLA1P09884 1462 aaPredicted RBP16.82■□□□□ 0.28
UPF3B-201ENST00000276201 FGD5Q6ZNL6 1462 aa16.79■□□□□ 0.28
UPF3B-201ENST00000276201 TARBP1Q13395 1621 aaKnown RBP16.79■□□□□ 0.28
UPF3B-201ENST00000276201 ZNF608Q9ULD9 1512 aaPredicted RBP16.78■□□□□ 0.28
UPF3B-201ENST00000276201 RAD54L2Q9Y4B4 1467 aa16.75■□□□□ 0.27
UPF3B-201ENST00000276201 WRNQ14191 1432 aaPredicted RBP eCLIP16.74■□□□□ 0.27
UPF3B-201ENST00000276201 SOGA1O94964 1423 aa16.73■□□□□ 0.27
UPF3B-201ENST00000276201 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
UPF3B-201ENST00000276201 EIF4G3O43432 1585 aaKnown RBP16.71■□□□□ 0.27
UPF3B-201ENST00000276201 TOP2BQ02880 1626 aa16.71■□□□□ 0.27
UPF3B-201ENST00000276201 BIVM-ERCC5R4GMW8 1640 aa16.71■□□□□ 0.27
UPF3B-201ENST00000276201 AQRO60306 1485 aaKnown RBP eCLIP16.68■□□□□ 0.265e-10■■■■■ 36.7
UPF3B-201ENST00000276201 WDR97A6NE52 1622 aa16.66■□□□□ 0.26
UPF3B-201ENST00000276201 DNAJC5Q9H3Z4 198 aa16.65■□□□□ 0.26
UPF3B-201ENST00000276201 TDRD9Q8NDG6 1382 aaKnown RBP16.65■□□□□ 0.26
UPF3B-201ENST00000276201 PCGF6Q9BYE7 350 aa16.63■□□□□ 0.25
UPF3B-201ENST00000276201 ABCA10Q8WWZ4 1543 aa16.62■□□□□ 0.25
UPF3B-201ENST00000276201 ABCA5Q8WWZ7 1642 aa16.57■□□□□ 0.24
UPF3B-201ENST00000276201 GAPVD1Q14C86 1478 aa16.55■□□□□ 0.24
UPF3B-201ENST00000276201 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
UPF3B-201ENST00000276201 SNAPC4Q5SXM2 1469 aa16.53■□□□□ 0.24
UPF3B-201ENST00000276201 PBRM1Q86U86 1689 aa16.53■□□□□ 0.24
UPF3B-201ENST00000276201 MAGI1Q96QZ7 1491 aaPredicted RBP16.5■□□□□ 0.23
UPF3B-201ENST00000276201 CHD1O14646 1710 aa16.49■□□□□ 0.23
UPF3B-201ENST00000276201 OSCARQ8IYS5 282 aa16.49■□□□□ 0.23
UPF3B-201ENST00000276201 TRIM26Q12899 539 aaPredicted RBP16.44■□□□□ 0.22
UPF3B-201ENST00000276201 FBLN2P98095 1184 aa16.44■□□□□ 0.22
UPF3B-201ENST00000276201 SYNJ2O15056 1496 aa16.44■□□□□ 0.22
UPF3B-201ENST00000276201 ERICH3Q5RHP9 1530 aa16.42■□□□□ 0.22
UPF3B-201ENST00000276201 PPARGC1BQ86YN6 1023 aaKnown RBP16.42■□□□□ 0.22
UPF3B-201ENST00000276201 ADAMTS12P58397 1594 aa16.41■□□□□ 0.22
UPF3B-201ENST00000276201 CHMP7Q8WUX9 453 aaPredicted RBP16.4■□□□□ 0.22
UPF3B-201ENST00000276201 ZEB1P37275 1124 aaPredicted RBP16.38■□□□□ 0.21
UPF3B-201ENST00000276201 KIF27Q86VH2 1401 aa16.38■□□□□ 0.21
UPF3B-201ENST00000276201 FHAD1B1AJZ9 1412 aa16.36■□□□□ 0.21
UPF3B-201ENST00000276201 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
UPF3B-201ENST00000276201 GRIN2AQ12879 1464 aa16.34■□□□□ 0.21
UPF3B-201ENST00000276201 TRIM41Q8WV44 630 aa16.34■□□□□ 0.21
UPF3B-201ENST00000276201 CLASP1Q7Z460 1538 aa16.32■□□□□ 0.2
UPF3B-201ENST00000276201 IGF1RP08069 1367 aa16.32■□□□□ 0.2
UPF3B-201ENST00000276201 CUL7Q14999 1698 aa16.28■□□□□ 0.2
UPF3B-201ENST00000276201 RUSC2Q8N2Y8 1516 aa16.27■□□□□ 0.2
UPF3B-201ENST00000276201 LOC105371045A0A1W2PR82 267 aa16.27■□□□□ 0.2
UPF3B-201ENST00000276201 CEP170Q5SW79 1584 aa16.27■□□□□ 0.2
UPF3B-201ENST00000276201 NUP160Q12769 1436 aa16.27■□□□□ 0.19
UPF3B-201ENST00000276201 RIMBP3CA6NJZ7 1639 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms