RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 JPH4Q96JJ6 628 aa21.11■□□□□ 0.97
SS18-202ENST00000269138 RIMBP3CA6NJZ7 1639 aa21.09■□□□□ 0.97
SS18-202ENST00000269138 RIMBP3BA6NNM3 1639 aa21.09■□□□□ 0.97
SS18-202ENST00000269138 RIMBP3Q9UFD9 1639 aa21.09■□□□□ 0.97
SS18-202ENST00000269138 EHMT2Q96KQ7 1210 aa21.08■□□□□ 0.96
SS18-202ENST00000269138 SHROOM2Q13796 1616 aa21.05■□□□□ 0.96
SS18-202ENST00000269138 ERCC6L2Q5T890 1561 aa21.05■□□□□ 0.96
SS18-202ENST00000269138 PRG4Q92954 1404 aaPredicted RBP21.04■□□□□ 0.96
SS18-202ENST00000269138 KIF21BO75037 1637 aa21.02■□□□□ 0.96
SS18-202ENST00000269138 IQGAP2Q13576 1575 aa21.01■□□□□ 0.95
SS18-202ENST00000269138 ARAP1Q96P48 1450 aa20.99■□□□□ 0.95
SS18-202ENST00000269138 CYB5RLQ6IPT4 315 aa20.99■□□□□ 0.95
SS18-202ENST00000269138 CTTNBP2Q8WZ74 1663 aa20.95■□□□□ 0.94
SS18-202ENST00000269138 GOLGA3Q08378 1498 aa20.94■□□□□ 0.94
SS18-202ENST00000269138 UBTFP17480 764 aaKnown RBP20.94■□□□□ 0.94
SS18-202ENST00000269138 UGGT2Q9NYU1 1516 aa20.91■□□□□ 0.94
SS18-202ENST00000269138 DISP1Q96F81 1524 aa20.89■□□□□ 0.94
SS18-202ENST00000269138 RANGAP1P46060 587 aaPredicted RBP20.88■□□□□ 0.93
SS18-202ENST00000269138 CARMIL2Q6F5E8 1435 aa20.88■□□□□ 0.93
SS18-202ENST00000269138 TTBK1Q5TCY1 1321 aaPredicted RBP20.86■□□□□ 0.93
SS18-202ENST00000269138 TNIKQ9UKE5 1360 aa20.82■□□□□ 0.92
SS18-202ENST00000269138 P3H3Q8IVL6 736 aa20.82■□□□□ 0.92
SS18-202ENST00000269138 KIAA0556O60303 1618 aa20.81■□□□□ 0.92
SS18-202ENST00000269138 PTPRGP23470 1445 aa20.8■□□□□ 0.92
SS18-202ENST00000269138 LOC105371045A0A1W2PR82 267 aa20.8■□□□□ 0.92
SS18-202ENST00000269138 SAMD9Q5K651 1589 aa20.74■□□□□ 0.91
SS18-202ENST00000269138 FHOD3Q2V2M9 1422 aa20.69■□□□□ 0.9
SS18-202ENST00000269138 EFCAB5A4FU69 1503 aa20.66■□□□□ 0.9
SS18-202ENST00000269138 ARHGAP35Q9NRY4 1499 aa20.66■□□□□ 0.9
SS18-202ENST00000269138 UACAQ9BZF9 1416 aa20.66■□□□□ 0.9
SS18-202ENST00000269138 ADCY10Q96PN6 1610 aa20.65■□□□□ 0.9
SS18-202ENST00000269138 PLB1Q6P1J6 1458 aa20.64■□□□□ 0.89
SS18-202ENST00000269138 CLIP1P30622 1438 aa20.61■□□□□ 0.89
SS18-202ENST00000269138 UHRF1BP1LA0JNW5 1464 aa20.6■□□□□ 0.89
SS18-202ENST00000269138 ABCC2Q92887 1545 aa20.59■□□□□ 0.89
SS18-202ENST00000269138 ABCA8O94911 1581 aa20.59■□□□□ 0.89
SS18-202ENST00000269138 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.89
SS18-202ENST00000269138 CEP162Q5TB80 1403 aa20.56■□□□□ 0.88
SS18-202ENST00000269138 ARID3CA6NKF2 412 aa20.54■□□□□ 0.88
SS18-202ENST00000269138 KDM5BQ9UGL1 1544 aa20.51■□□□□ 0.87
SS18-202ENST00000269138 RAPGEF6Q8TEU7 1601 aa20.5■□□□□ 0.87
SS18-202ENST00000269138 FMN1Q68DA7 1419 aa20.5■□□□□ 0.87
SS18-202ENST00000269138 TRHP20396 242 aaPredicted RBP20.48■□□□□ 0.87
SS18-202ENST00000269138 NUP153P49790 1475 aaKnown RBP20.47■□□□□ 0.87
SS18-202ENST00000269138 ZCCHC11Q5TAX3 1644 aaKnown RBP20.46■□□□□ 0.87
SS18-202ENST00000269138 ATP10BO94823 1461 aa20.46■□□□□ 0.87
SS18-202ENST00000269138 ATP1B4Q9UN42 357 aaPredicted RBP20.46■□□□□ 0.87
SS18-202ENST00000269138 MAPKBP1O60336 1514 aa20.45■□□□□ 0.86
SS18-202ENST00000269138 ASXL2Q76L83 1435 aa20.44■□□□□ 0.86
SS18-202ENST00000269138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.41■□□□□ 0.86
SS18-202ENST00000269138 HNRNPUL2Q1KMD3 747 aaKnown RBP20.41■□□□□ 0.86
SS18-202ENST00000269138 CASKIN1Q8WXD9 1431 aa20.38■□□□□ 0.85
SS18-202ENST00000269138 PCF11O94913 1555 aaKnown RBP20.37■□□□□ 0.85
SS18-202ENST00000269138 FAM69CQ0P6D2 419 aa20.37■□□□□ 0.85
SS18-202ENST00000269138 ABCC10Q5T3U5 1492 aa20.37■□□□□ 0.85
SS18-202ENST00000269138 CDK13Q14004 1512 aaKnown RBP20.36■□□□□ 0.85
SS18-202ENST00000269138 HECW1Q76N89 1606 aa20.36■□□□□ 0.85
SS18-202ENST00000269138 EPRSP07814 1512 aaKnown RBP20.35■□□□□ 0.85
SS18-202ENST00000269138 WDR7Q9Y4E6 1490 aa20.34■□□□□ 0.85
SS18-202ENST00000269138 KCNH8Q96L42 1107 aa20.34■□□□□ 0.85
SS18-202ENST00000269138 DIP2BQ9P265 1576 aa20.32■□□□□ 0.84
SS18-202ENST00000269138 FYCO1Q9BQS8 1478 aa20.32■□□□□ 0.84
SS18-202ENST00000269138 PLEKHD1A6NEE1 506 aa20.3■□□□□ 0.84
SS18-202ENST00000269138 VPS8Q8N3P4 1428 aa20.29■□□□□ 0.84
SS18-202ENST00000269138 KIF13AQ9H1H9 1805 aa20.29■□□□□ 0.84
SS18-202ENST00000269138 LRRIQ1Q96JM4 1722 aa20.28■□□□□ 0.84
SS18-202ENST00000269138 GLI2P10070 1586 aa20.24■□□□□ 0.83
SS18-202ENST00000269138 CCDC18Q5T9S5 1454 aa20.24■□□□□ 0.83
SS18-202ENST00000269138 CDK11AQ9UQ88 783 aaPredicted RBP20.22■□□□□ 0.83
SS18-202ENST00000269138 TROQ12816 1431 aaPredicted RBP20.18■□□□□ 0.82
SS18-202ENST00000269138 MAGI3Q5TCQ9 1506 aa20.18■□□□□ 0.82
SS18-202ENST00000269138 CD109Q6YHK3 1445 aa20.16■□□□□ 0.82
SS18-202ENST00000269138 MAP3K4Q9Y6R4 1608 aa20.15■□□□□ 0.82
SS18-202ENST00000269138 TSPOAP1O95153 1857 aa20.14■□□□□ 0.82
SS18-202ENST00000269138 ABCA9Q8IUA7 1624 aa20.13■□□□□ 0.81
SS18-202ENST00000269138 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.12■□□□□ 0.81
SS18-202ENST00000269138 KIF14Q15058 1648 aa20.11■□□□□ 0.81
SS18-202ENST00000269138 PPRC1Q5VV67 1664 aaKnown RBP20.1■□□□□ 0.81
SS18-202ENST00000269138 CFAP43Q8NDM7 1665 aa20.1■□□□□ 0.81
SS18-202ENST00000269138 MTUS2Q5JR59 1369 aa20.1■□□□□ 0.81
SS18-202ENST00000269138 TIAM1Q13009 1591 aa20.09■□□□□ 0.81
SS18-202ENST00000269138 TTC37Q6PGP7 1564 aa20.09■□□□□ 0.81
SS18-202ENST00000269138 KANK4Q5T7N3 995 aaPredicted RBP20.07■□□□□ 0.8
SS18-202ENST00000269138 APLP2Q06481 763 aa20.05■□□□□ 0.8
SS18-202ENST00000269138 MAP3K1Q13233 1512 aa20.05■□□□□ 0.8
SS18-202ENST00000269138 TEX14Q8IWB6 1497 aa20.03■□□□□ 0.8
SS18-202ENST00000269138 EHBP1L1Q8N3D4 1523 aa20.03■□□□□ 0.8
SS18-202ENST00000269138 LRRC9Q6ZRR7 1453 aa20.03■□□□□ 0.8
SS18-202ENST00000269138 PLCH2O75038 1416 aa20.02■□□□□ 0.8
SS18-202ENST00000269138 COL17A1Q9UMD9 1497 aaPredicted RBP19.98■□□□□ 0.79
SS18-202ENST00000269138 FANCAO15360 1455 aa19.96■□□□□ 0.79
SS18-202ENST00000269138 EFCAB2Q5VUJ9 269 aa19.96■□□□□ 0.79
SS18-202ENST00000269138 CCNB3Q8WWL7 1395 aa19.96■□□□□ 0.79
SS18-202ENST00000269138 NCOA2Q15596 1464 aa19.95■□□□□ 0.78
SS18-202ENST00000269138 GPATCH8Q9UKJ3 1502 aaKnown RBP19.95■□□□□ 0.78
SS18-202ENST00000269138 NEO1Q92859 1461 aa19.95■□□□□ 0.78
SS18-202ENST00000269138 MYO5CQ9NQX4 1742 aa19.94■□□□□ 0.78
SS18-202ENST00000269138 AKNAQ7Z591 1439 aa19.94■□□□□ 0.78
SS18-202ENST00000269138 KDM6BO15054 1643 aa19.93■□□□□ 0.78
SS18-202ENST00000269138 ARHGAP5Q13017 1502 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms