RNA–Protein interactions for RNA: ENST00000265044.6

SSR3-201, Transcript of signal sequence receptor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSR3, Length 3,716 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR3-201ENST00000265044 PRDM2Q13029 1718 aa13.82□□□□□ -0.2
SSR3-201ENST00000265044 MTUS2Q5JR59 1369 aa13.81□□□□□ -0.2
SSR3-201ENST00000265044 FHAD1B1AJZ9 1412 aa13.81□□□□□ -0.2
SSR3-201ENST00000265044 KIF21AQ7Z4S6 1674 aa13.8□□□□□ -0.2
SSR3-201ENST00000265044 IFT140Q96RY7 1462 aa13.78□□□□□ -0.2
SSR3-201ENST00000265044 CDK11AQ9UQ88 783 aaPredicted RBP13.78□□□□□ -0.2
SSR3-201ENST00000265044 GRIN2BQ13224 1484 aa13.77□□□□□ -0.21
SSR3-201ENST00000265044 ARAP1Q96P48 1450 aa13.76□□□□□ -0.21
SSR3-201ENST00000265044 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
SSR3-201ENST00000265044 ZNF608Q9ULD9 1512 aaPredicted RBP13.74□□□□□ -0.21
SSR3-201ENST00000265044 JPH4Q96JJ6 628 aa13.72□□□□□ -0.21
SSR3-201ENST00000265044 ZNF777Q9ULD5 760 aaPredicted RBP13.72□□□□□ -0.21
SSR3-201ENST00000265044 FMN1Q68DA7 1419 aa13.72□□□□□ -0.21
SSR3-201ENST00000265044 SNAPC4Q5SXM2 1469 aa13.68□□□□□ -0.22
SSR3-201ENST00000265044 CHIC2Q9UKJ5 165 aa13.66□□□□□ -0.22
SSR3-201ENST00000265044 CCNB3Q8WWL7 1395 aa13.65□□□□□ -0.22
SSR3-201ENST00000265044 CUL7Q14999 1698 aa13.64□□□□□ -0.23
SSR3-201ENST00000265044 TRIM52Q96A61 297 aa13.64□□□□□ -0.23
SSR3-201ENST00000265044 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
SSR3-201ENST00000265044 PLEKHD1A6NEE1 506 aa13.63□□□□□ -0.23
SSR3-201ENST00000265044 MYT1LQ9UL68 1186 aa13.63□□□□□ -0.23
SSR3-201ENST00000265044 NEUROD1Q13562 356 aa13.62□□□□□ -0.23
SSR3-201ENST00000265044 WDR62O43379 1518 aa13.59□□□□□ -0.23
SSR3-201ENST00000265044 KCNH8Q96L42 1107 aa13.59□□□□□ -0.23
SSR3-201ENST00000265044 RRP7BPQ9NSQ0 103 aa13.56□□□□□ -0.24
SSR3-201ENST00000265044 CFDP1Q9UEE9 299 aaPredicted RBP13.55□□□□□ -0.24
SSR3-201ENST00000265044 EFCAB5A4FU69 1503 aa13.55□□□□□ -0.24
SSR3-201ENST00000265044 TARBP1Q13395 1621 aaKnown RBP13.55□□□□□ -0.24
SSR3-201ENST00000265044 CASKIN1Q8WXD9 1431 aa13.55□□□□□ -0.24
SSR3-201ENST00000265044 GRIN2AQ12879 1464 aa13.54□□□□□ -0.24
SSR3-201ENST00000265044 ABCA5Q8WWZ7 1642 aa13.54□□□□□ -0.24
SSR3-201ENST00000265044 SYNJ2O15056 1496 aa13.53□□□□□ -0.24
SSR3-201ENST00000265044 KIAA0586Q9BVV6 1533 aa13.53□□□□□ -0.24
SSR3-201ENST00000265044 MAGI1Q96QZ7 1491 aaPredicted RBP13.53□□□□□ -0.24
SSR3-201ENST00000265044 NPM1P06748 294 aaKnown RBP eCLIP13.53□□□□□ -0.24
SSR3-201ENST00000265044 LRRC9Q6ZRR7 1453 aa13.52□□□□□ -0.24
SSR3-201ENST00000265044 IQGAP2Q13576 1575 aa13.52□□□□□ -0.25
SSR3-201ENST00000265044 PHLDB1Q86UU1 1377 aa13.5□□□□□ -0.25
SSR3-201ENST00000265044 PTPRGP23470 1445 aa13.5□□□□□ -0.25
SSR3-201ENST00000265044 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
SSR3-201ENST00000265044 EIF4G3O43432 1585 aaKnown RBP13.49□□□□□ -0.25
SSR3-201ENST00000265044 ADAMTS12P58397 1594 aa13.47□□□□□ -0.25
SSR3-201ENST00000265044 TSPY4P0CV99 314 aa13.47□□□□□ -0.25
SSR3-201ENST00000265044 TSPY10P0CW01 314 aa13.47□□□□□ -0.25
SSR3-201ENST00000265044 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
SSR3-201ENST00000265044 PCF11O94913 1555 aaKnown RBP13.46□□□□□ -0.25
SSR3-201ENST00000265044 TIAM1Q13009 1591 aa13.46□□□□□ -0.25
SSR3-201ENST00000265044 PBRM1Q86U86 1689 aa13.45□□□□□ -0.26
SSR3-201ENST00000265044 OSCARQ8IYS5 282 aa13.44□□□□□ -0.26
SSR3-201ENST00000265044 CTTNBP2Q8WZ74 1663 aa13.44□□□□□ -0.26
SSR3-201ENST00000265044 THOC2Q8NI27 1593 aaKnown RBP13.43□□□□□ -0.26
SSR3-201ENST00000265044 CCDC18Q5T9S5 1454 aa13.43□□□□□ -0.26
SSR3-201ENST00000265044 RAB3GAP2Q9H2M9 1393 aa13.42□□□□□ -0.26
SSR3-201ENST00000265044 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
SSR3-201ENST00000265044 SETD5Q9C0A6 1442 aa13.41□□□□□ -0.26
SSR3-201ENST00000265044 DIEXFQ68CQ4 756 aaKnown RBP13.41□□□□□ -0.26
SSR3-201ENST00000265044 RRBP1Q9P2E9 1410 aaKnown RBP13.39□□□□□ -0.27
SSR3-201ENST00000265044 NCOA2Q15596 1464 aa13.39□□□□□ -0.27
SSR3-201ENST00000265044 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
SSR3-201ENST00000265044 CDK13Q14004 1512 aaKnown RBP13.38□□□□□ -0.27
SSR3-201ENST00000265044 FGD6Q6ZV73 1430 aa13.38□□□□□ -0.27
SSR3-201ENST00000265044 SIN3AQ96ST3 1273 aa13.38□□□□□ -0.27
SSR3-201ENST00000265044 PLB1Q6P1J6 1458 aa13.38□□□□□ -0.27
SSR3-201ENST00000265044 ZNF644Q9H582 1327 aaPredicted RBP13.37□□□□□ -0.27
SSR3-201ENST00000265044 EPRSP07814 1512 aaKnown RBP13.37□□□□□ -0.27
SSR3-201ENST00000265044 MYOM3Q5VTT5 1437 aa13.36□□□□□ -0.27
SSR3-201ENST00000265044 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.35□□□□□ -0.277e-7■■□□□ 13.2
SSR3-201ENST00000265044 SLC4A1APQ9BWU0 796 aaKnown RBP13.35□□□□□ -0.27
SSR3-201ENST00000265044 MAP3K1Q13233 1512 aa13.34□□□□□ -0.27
SSR3-201ENST00000265044 HECW1Q76N89 1606 aa13.34□□□□□ -0.27
SSR3-201ENST00000265044 TONSLQ96HA7 1378 aa13.33□□□□□ -0.27
SSR3-201ENST00000265044 ZNF326Q5BKZ1 582 aaKnown RBP13.33□□□□□ -0.28
SSR3-201ENST00000265044 HNRNPMP52272 730 aaKnown RBP eCLIP13.33□□□□□ -0.282e-9■■□□□ 12.7
SSR3-201ENST00000265044 UGGT2Q9NYU1 1516 aa13.32□□□□□ -0.28
SSR3-201ENST00000265044 CLSPNQ9HAW4 1339 aa13.32□□□□□ -0.28
SSR3-201ENST00000265044 DHX57Q6P158 1386 aaKnown RBP13.31□□□□□ -0.28
SSR3-201ENST00000265044 NUP160Q12769 1436 aa13.31□□□□□ -0.28
SSR3-201ENST00000265044 EHBP1L1Q8N3D4 1523 aa13.3□□□□□ -0.28
SSR3-201ENST00000265044 DISP1Q96F81 1524 aa13.3□□□□□ -0.28
SSR3-201ENST00000265044 YTHDC1Q96MU7 727 aaKnown RBP13.29□□□□□ -0.28
SSR3-201ENST00000265044 CEP170Q5SW79 1584 aa13.29□□□□□ -0.28
SSR3-201ENST00000265044 CYB5RLQ6IPT4 315 aa13.28□□□□□ -0.28
SSR3-201ENST00000265044 SAMD9Q5K651 1589 aa13.28□□□□□ -0.28
SSR3-201ENST00000265044 KIAA0556O60303 1618 aa13.28□□□□□ -0.28
SSR3-201ENST00000265044 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.28
SSR3-201ENST00000265044 FOXD1Q16676 465 aa13.27□□□□□ -0.29
SSR3-201ENST00000265044 POLR3GLQ9BT43 218 aa13.27□□□□□ -0.29
SSR3-201ENST00000265044 EFCAB2Q5VUJ9 269 aa13.26□□□□□ -0.29
SSR3-201ENST00000265044 UACAQ9BZF9 1416 aa13.25□□□□□ -0.29
SSR3-201ENST00000265044 SUPT6HQ7KZ85 1726 aaKnown RBP13.25□□□□□ -0.29
SSR3-201ENST00000265044 NUP153P49790 1475 aaKnown RBP13.25□□□□□ -0.29
SSR3-201ENST00000265044 HIRIP3Q9BW71 556 aaPredicted RBP13.24□□□□□ -0.29
SSR3-201ENST00000265044 MPHOSPH9Q99550 1183 aa13.22□□□□□ -0.29
SSR3-201ENST00000265044 RAPGEF6Q8TEU7 1601 aa13.22□□□□□ -0.29
SSR3-201ENST00000265044 ANKRD30AQ9BXX3 1397 aa13.21□□□□□ -0.29
SSR3-201ENST00000265044 MIA2Q96PC5 1412 aa13.2□□□□□ -0.3
SSR3-201ENST00000265044 CFAP43Q8NDM7 1665 aa13.19□□□□□ -0.3
SSR3-201ENST00000265044 CNGB1Q14028 1251 aaPredicted RBP13.19□□□□□ -0.3
SSR3-201ENST00000265044 ATP10BO94823 1461 aa13.19□□□□□ -0.3
SSR3-201ENST00000265044 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms