RNA–Protein interactions for RNA: ENST00000258947.7

CALCOCO2-201, Transcript of calcium binding and coiled-coil domain 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CALCOCO2, Length 3,682 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALCOCO2-201ENST00000258947 ARAP1Q96P48 1450 aa13.05□□□□□ -0.32
CALCOCO2-201ENST00000258947 FAM50AQ14320 339 aaKnown RBP13.05□□□□□ -0.32
CALCOCO2-201ENST00000258947 FHOD3Q2V2M9 1422 aa13.03□□□□□ -0.32
CALCOCO2-201ENST00000258947 ARHGAP35Q9NRY4 1499 aa13.02□□□□□ -0.32
CALCOCO2-201ENST00000258947 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
CALCOCO2-201ENST00000258947 ZNF608Q9ULD9 1512 aaPredicted RBP12.97□□□□□ -0.33
CALCOCO2-201ENST00000258947 IFT140Q96RY7 1462 aa12.96□□□□□ -0.34
CALCOCO2-201ENST00000258947 GRIN2BQ13224 1484 aa12.94□□□□□ -0.34
CALCOCO2-201ENST00000258947 MTUS2Q5JR59 1369 aa12.93□□□□□ -0.34
CALCOCO2-201ENST00000258947 CUL7Q14999 1698 aa12.92□□□□□ -0.34
CALCOCO2-201ENST00000258947 FMN1Q68DA7 1419 aa12.89□□□□□ -0.35
CALCOCO2-201ENST00000258947 SNAPC4Q5SXM2 1469 aa12.89□□□□□ -0.35
CALCOCO2-201ENST00000258947 ABCA5Q8WWZ7 1642 aa12.86□□□□□ -0.35
CALCOCO2-201ENST00000258947 TARBP1Q13395 1621 aaKnown RBP12.86□□□□□ -0.35
CALCOCO2-201ENST00000258947 CCNB3Q8WWL7 1395 aa12.86□□□□□ -0.35
CALCOCO2-201ENST00000258947 WDR62O43379 1518 aa12.86□□□□□ -0.35
CALCOCO2-201ENST00000258947 JPH4Q96JJ6 628 aa12.82□□□□□ -0.36
CALCOCO2-201ENST00000258947 EFCAB5A4FU69 1503 aa12.81□□□□□ -0.36
CALCOCO2-201ENST00000258947 CDK11AQ9UQ88 783 aaPredicted RBP12.81□□□□□ -0.36
CALCOCO2-201ENST00000258947 WDR97A6NE52 1622 aa12.8□□□□□ -0.36
CALCOCO2-201ENST00000258947 PCF11O94913 1555 aaKnown RBP12.79□□□□□ -0.36
CALCOCO2-201ENST00000258947 CASKIN1Q8WXD9 1431 aa12.79□□□□□ -0.36
CALCOCO2-201ENST00000258947 LRRC9Q6ZRR7 1453 aa12.79□□□□□ -0.36
CALCOCO2-201ENST00000258947 CHIC2Q9UKJ5 165 aa12.78□□□□□ -0.36
CALCOCO2-201ENST00000258947 ZNF777Q9ULD5 760 aaPredicted RBP12.78□□□□□ -0.36
CALCOCO2-201ENST00000258947 PBRM1Q86U86 1689 aa12.78□□□□□ -0.36
CALCOCO2-201ENST00000258947 EIF4G3O43432 1585 aaKnown RBP12.78□□□□□ -0.36
CALCOCO2-201ENST00000258947 CTTNBP2Q8WZ74 1663 aa12.77□□□□□ -0.36
CALCOCO2-201ENST00000258947 PHLDB1Q86UU1 1377 aa12.77□□□□□ -0.36
CALCOCO2-201ENST00000258947 TIAM1Q13009 1591 aa12.77□□□□□ -0.37
CALCOCO2-201ENST00000258947 ADAMTS12P58397 1594 aa12.77□□□□□ -0.37
CALCOCO2-201ENST00000258947 IQGAP2Q13576 1575 aa12.77□□□□□ -0.37
CALCOCO2-201ENST00000258947 GRIN2AQ12879 1464 aa12.77□□□□□ -0.37
CALCOCO2-201ENST00000258947 FYCO1Q9BQS8 1478 aa12.76□□□□□ -0.37
CALCOCO2-201ENST00000258947 CARMIL2Q6F5E8 1435 aa12.75□□□□□ -0.37
CALCOCO2-201ENST00000258947 NEUROD1Q13562 356 aa12.74□□□□□ -0.37
CALCOCO2-201ENST00000258947 THOC2Q8NI27 1593 aaKnown RBP12.74□□□□□ -0.37
CALCOCO2-201ENST00000258947 SYNJ2O15056 1496 aa12.74□□□□□ -0.37
CALCOCO2-201ENST00000258947 KIAA0586Q9BVV6 1533 aa12.73□□□□□ -0.37
CALCOCO2-201ENST00000258947 MAGI1Q96QZ7 1491 aaPredicted RBP12.73□□□□□ -0.37
CALCOCO2-201ENST00000258947 TRIM52Q96A61 297 aa12.72□□□□□ -0.37
CALCOCO2-201ENST00000258947 RRP7BPQ9NSQ0 103 aa12.71□□□□□ -0.38
CALCOCO2-201ENST00000258947 RRBP1Q9P2E9 1410 aaKnown RBP12.7□□□□□ -0.38
CALCOCO2-201ENST00000258947 PLEKHD1A6NEE1 506 aa12.69□□□□□ -0.38
CALCOCO2-201ENST00000258947 RAB3GAP2Q9H2M9 1393 aa12.67□□□□□ -0.38
CALCOCO2-201ENST00000258947 CDK13Q14004 1512 aaKnown RBP12.66□□□□□ -0.38
CALCOCO2-201ENST00000258947 CFDP1Q9UEE9 299 aaPredicted RBP12.66□□□□□ -0.38
CALCOCO2-201ENST00000258947 KCNH8Q96L42 1107 aa12.65□□□□□ -0.38
CALCOCO2-201ENST00000258947 NCOA2Q15596 1464 aa12.65□□□□□ -0.38
CALCOCO2-201ENST00000258947 MAP3K1Q13233 1512 aa12.65□□□□□ -0.38
CALCOCO2-201ENST00000258947 FGD6Q6ZV73 1430 aa12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 PRG4Q92954 1404 aaPredicted RBP12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 SETD5Q9C0A6 1442 aa12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 CCDC18Q5T9S5 1454 aa12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 PTPRGP23470 1445 aa12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 SAMD9Q5K651 1589 aa12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 EPRSP07814 1512 aaKnown RBP12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 DIEXFQ68CQ4 756 aaKnown RBP12.63□□□□□ -0.39
CALCOCO2-201ENST00000258947 PLB1Q6P1J6 1458 aa12.62□□□□□ -0.39
CALCOCO2-201ENST00000258947 DHX57Q6P158 1386 aaKnown RBP12.61□□□□□ -0.39
CALCOCO2-201ENST00000258947 HECW1Q76N89 1606 aa12.61□□□□□ -0.39
CALCOCO2-201ENST00000258947 MYOM3Q5VTT5 1437 aa12.61□□□□□ -0.39
CALCOCO2-201ENST00000258947 ZNF316A6NFI3 1004 aaPredicted RBP12.6□□□□□ -0.39
CALCOCO2-201ENST00000258947 UGGT2Q9NYU1 1516 aa12.6□□□□□ -0.39
CALCOCO2-201ENST00000258947 DISP1Q96F81 1524 aa12.59□□□□□ -0.39
CALCOCO2-201ENST00000258947 CEP170Q5SW79 1584 aa12.59□□□□□ -0.39
CALCOCO2-201ENST00000258947 SIN3AQ96ST3 1273 aa12.59□□□□□ -0.39
CALCOCO2-201ENST00000258947 MYT1LQ9UL68 1186 aa12.59□□□□□ -0.39
CALCOCO2-201ENST00000258947 ZNF644Q9H582 1327 aaPredicted RBP12.59□□□□□ -0.39
CALCOCO2-201ENST00000258947 KIAA0556O60303 1618 aa12.58□□□□□ -0.4
CALCOCO2-201ENST00000258947 CFAP43Q8NDM7 1665 aa12.58□□□□□ -0.4
CALCOCO2-201ENST00000258947 EHBP1L1Q8N3D4 1523 aa12.57□□□□□ -0.4
CALCOCO2-201ENST00000258947 NUP160Q12769 1436 aa12.57□□□□□ -0.4
CALCOCO2-201ENST00000258947 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
CALCOCO2-201ENST00000258947 CLSPNQ9HAW4 1339 aa12.54□□□□□ -0.4
CALCOCO2-201ENST00000258947 TSPY4P0CV99 314 aa12.53□□□□□ -0.4
CALCOCO2-201ENST00000258947 TSPY10P0CW01 314 aa12.53□□□□□ -0.4
CALCOCO2-201ENST00000258947 NUP153P49790 1475 aaKnown RBP12.53□□□□□ -0.4
CALCOCO2-201ENST00000258947 RAPGEF6Q8TEU7 1601 aa12.5□□□□□ -0.41
CALCOCO2-201ENST00000258947 NPM1P06748 294 aaKnown RBP eCLIP12.5□□□□□ -0.41
CALCOCO2-201ENST00000258947 TONSLQ96HA7 1378 aa12.5□□□□□ -0.41
CALCOCO2-201ENST00000258947 MAGI3Q5TCQ9 1506 aa12.5□□□□□ -0.41
CALCOCO2-201ENST00000258947 TROQ12816 1431 aaPredicted RBP12.49□□□□□ -0.41
CALCOCO2-201ENST00000258947 YTHDC1Q96MU7 727 aaKnown RBP12.49□□□□□ -0.41
CALCOCO2-201ENST00000258947 OSCARQ8IYS5 282 aa12.49□□□□□ -0.41
CALCOCO2-201ENST00000258947 HNRNPMP52272 730 aaKnown RBP eCLIP12.48□□□□□ -0.41
CALCOCO2-201ENST00000258947 FOXD1Q16676 465 aa12.48□□□□□ -0.41
CALCOCO2-201ENST00000258947 SLC4A1APQ9BWU0 796 aaKnown RBP12.48□□□□□ -0.41
CALCOCO2-201ENST00000258947 PTPRKQ15262 1439 aa12.46□□□□□ -0.42
CALCOCO2-201ENST00000258947 HIRIP3Q9BW71 556 aaPredicted RBP12.46□□□□□ -0.42
CALCOCO2-201ENST00000258947 PTPN23Q9H3S7 1636 aa12.45□□□□□ -0.42
CALCOCO2-201ENST00000258947 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.45□□□□□ -0.42
CALCOCO2-201ENST00000258947 CHD1O14646 1710 aa12.44□□□□□ -0.42
CALCOCO2-201ENST00000258947 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.44□□□□□ -0.422e-10■■□□□ 14.5
CALCOCO2-201ENST00000258947 UACAQ9BZF9 1416 aa12.44□□□□□ -0.42
CALCOCO2-201ENST00000258947 MIA2Q96PC5 1412 aa12.44□□□□□ -0.42
CALCOCO2-201ENST00000258947 ZNF326Q5BKZ1 582 aaKnown RBP12.44□□□□□ -0.42
CALCOCO2-201ENST00000258947 ATP10BO94823 1461 aa12.43□□□□□ -0.42
CALCOCO2-201ENST00000258947 LRRIQ1Q96JM4 1722 aa12.42□□□□□ -0.42
CALCOCO2-201ENST00000258947 HFM1A2PYH4 1435 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms