RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 SIN3AQ96ST3 1273 aa22.13■■□□□ 1.13
DDX55-201ENST00000238146 LRRC9Q6ZRR7 1453 aa22.12■■□□□ 1.13
DDX55-201ENST00000238146 PHLDB1Q86UU1 1377 aa22.11■■□□□ 1.13
DDX55-201ENST00000238146 ANP32EQ9BTT0 268 aa22.11■■□□□ 1.13
DDX55-201ENST00000238146 BCANQ96GW7 911 aa22.09■■□□□ 1.13
DDX55-201ENST00000238146 PPP1R15AO75807 674 aaPredicted RBP22.08■■□□□ 1.12
DDX55-201ENST00000238146 FKBP8Q14318 412 aa22.08■■□□□ 1.12
DDX55-201ENST00000238146 FAM50AQ14320 339 aaKnown RBP22.05■■□□□ 1.12
DDX55-201ENST00000238146 TIMELESSQ9UNS1 1208 aa22.04■■□□□ 1.12
DDX55-201ENST00000238146 CARMIL1Q5VZK9 1371 aa22.04■■□□□ 1.12
DDX55-201ENST00000238146 FHAD1B1AJZ9 1412 aa21.98■■□□□ 1.11
DDX55-201ENST00000238146 CCER2I3L3R5 266 aa21.97■■□□□ 1.11
DDX55-201ENST00000238146 HIRIP3Q9BW71 556 aaPredicted RBP21.96■■□□□ 1.11
DDX55-201ENST00000238146 CFAP43Q8NDM7 1665 aa21.95■■□□□ 1.1
DDX55-201ENST00000238146 PCF11O94913 1555 aaKnown RBP21.93■■□□□ 1.1
DDX55-201ENST00000238146 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
DDX55-201ENST00000238146 NEFLP07196 543 aa21.92■■□□□ 1.1
DDX55-201ENST00000238146 TRIM52Q96A61 297 aa21.92■■□□□ 1.1
DDX55-201ENST00000238146 ANP32CO43423 234 aa21.91■■□□□ 1.1
DDX55-201ENST00000238146 P3H3Q8IVL6 736 aa21.91■■□□□ 1.1
DDX55-201ENST00000238146 FGD5Q6ZNL6 1462 aa21.91■■□□□ 1.1
DDX55-201ENST00000238146 ATP1B4Q9UN42 357 aaPredicted RBP21.89■■□□□ 1.09
DDX55-201ENST00000238146 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.87■■□□□ 1.09
DDX55-201ENST00000238146 RBM19Q9Y4C8 960 aaKnown RBP21.86■■□□□ 1.09
DDX55-201ENST00000238146 CADPSQ9ULU8 1353 aa21.84■■□□□ 1.09
DDX55-201ENST00000238146 FHOD3Q2V2M9 1422 aa21.83■■□□□ 1.09
DDX55-201ENST00000238146 FYCO1Q9BQS8 1478 aa21.82■■□□□ 1.08
DDX55-201ENST00000238146 TONSLQ96HA7 1378 aa21.79■■□□□ 1.08
DDX55-201ENST00000238146 CASKIN1Q8WXD9 1431 aa21.79■■□□□ 1.08
DDX55-201ENST00000238146 AQRO60306 1485 aaKnown RBP eCLIP21.76■■□□□ 1.071e-6■■■■■ 42.9
DDX55-201ENST00000238146 FGD6Q6ZV73 1430 aa21.76■■□□□ 1.07
DDX55-201ENST00000238146 EFCAB5A4FU69 1503 aa21.74■■□□□ 1.07
DDX55-201ENST00000238146 CCDC18Q5T9S5 1454 aa21.74■■□□□ 1.07
DDX55-201ENST00000238146 UACAQ9BZF9 1416 aa21.72■■□□□ 1.07
DDX55-201ENST00000238146 HFM1A2PYH4 1435 aa21.71■■□□□ 1.07
DDX55-201ENST00000238146 PTPRKQ15262 1439 aa21.71■■□□□ 1.07
DDX55-201ENST00000238146 PTPN23Q9H3S7 1636 aa21.66■■□□□ 1.06
DDX55-201ENST00000238146 RAD54L2Q9Y4B4 1467 aa21.66■■□□□ 1.06
DDX55-201ENST00000238146 FMN1Q68DA7 1419 aa21.65■■□□□ 1.06
DDX55-201ENST00000238146 ABCA10Q8WWZ4 1543 aa21.64■■□□□ 1.06
DDX55-201ENST00000238146 BCL11AQ9H165 835 aa21.64■■□□□ 1.05
DDX55-201ENST00000238146 MTUS2Q5JR59 1369 aa21.63■■□□□ 1.05
DDX55-201ENST00000238146 SNAPC4Q5SXM2 1469 aa21.63■■□□□ 1.05
DDX55-201ENST00000238146 KDM5BQ9UGL1 1544 aa21.63■■□□□ 1.05
DDX55-201ENST00000238146 NAIPQ13075 1403 aa21.63■■□□□ 1.05
DDX55-201ENST00000238146 HNRNPUQ00839 825 aaKnown RBP eCLIP21.63■■□□□ 1.05
DDX55-201ENST00000238146 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
DDX55-201ENST00000238146 MSH5O43196 834 aa21.61■■□□□ 1.05
DDX55-201ENST00000238146 CC2D2AQ9P2K1 1620 aa21.59■■□□□ 1.05
DDX55-201ENST00000238146 CTTNBP2Q8WZ74 1663 aa21.59■■□□□ 1.05
DDX55-201ENST00000238146 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.05
DDX55-201ENST00000238146 DNMBPQ6XZF7 1577 aa21.58■■□□□ 1.04
DDX55-201ENST00000238146 CUL7Q14999 1698 aa21.57■■□□□ 1.04
DDX55-201ENST00000238146 MYOM3Q5VTT5 1437 aa21.56■■□□□ 1.04
DDX55-201ENST00000238146 NCOA2Q15596 1464 aa21.56■■□□□ 1.04
DDX55-201ENST00000238146 WASHC2AQ641Q2 1341 aa21.56■■□□□ 1.04
DDX55-201ENST00000238146 IRX6P78412 446 aaPredicted RBP21.55■■□□□ 1.04
DDX55-201ENST00000238146 TOPBP1Q92547 1522 aa21.54■■□□□ 1.04
DDX55-201ENST00000238146 HSPA5P11021 654 aaKnown RBP21.53■■□□□ 1.04
DDX55-201ENST00000238146 FANCIQ9NVI1 1328 aa21.52■■□□□ 1.04
DDX55-201ENST00000238146 CDK11AQ9UQ88 783 aaPredicted RBP21.52■■□□□ 1.04
DDX55-201ENST00000238146 LRRIQ1Q96JM4 1722 aa21.5■■□□□ 1.03
DDX55-201ENST00000238146 GRIN2BQ13224 1484 aa21.49■■□□□ 1.03
DDX55-201ENST00000238146 SAMD9Q5K651 1589 aa21.48■■□□□ 1.03
DDX55-201ENST00000238146 ERICH6BQ5W0A0 696 aa21.46■■□□□ 1.03
DDX55-201ENST00000238146 SUPT6HQ7KZ85 1726 aaKnown RBP21.46■■□□□ 1.03
DDX55-201ENST00000238146 DENND4BO75064 1496 aaPredicted RBP21.46■■□□□ 1.03
DDX55-201ENST00000238146 RRP7BPQ9NSQ0 103 aa21.45■■□□□ 1.02
DDX55-201ENST00000238146 EIF4G2P78344 907 aaKnown RBP eCLIP21.45■■□□□ 1.02
DDX55-201ENST00000238146 CCDC184Q52MB2 194 aa21.45■■□□□ 1.02
DDX55-201ENST00000238146 EHBP1L1Q8N3D4 1523 aa21.44■■□□□ 1.02
DDX55-201ENST00000238146 THOC2Q8NI27 1593 aaKnown RBP21.43■■□□□ 1.02
DDX55-201ENST00000238146 UGGT2Q9NYU1 1516 aa21.42■■□□□ 1.02
DDX55-201ENST00000238146 CNTLNQ9NXG0 1405 aa21.42■■□□□ 1.02
DDX55-201ENST00000238146 PPP4R2Q9NY27 417 aa21.42■■□□□ 1.02
DDX55-201ENST00000238146 CHIC2Q9UKJ5 165 aa21.42■■□□□ 1.02
DDX55-201ENST00000238146 ARHGEF11O15085 1522 aa21.41■■□□□ 1.02
DDX55-201ENST00000238146 HECW1Q76N89 1606 aa21.38■■□□□ 1.01
DDX55-201ENST00000238146 MAGI3Q5TCQ9 1506 aa21.38■■□□□ 1.01
DDX55-201ENST00000238146 C11orf95C9JLR9 678 aaPredicted RBP21.38■■□□□ 1.01
DDX55-201ENST00000238146 PRKRIP1Q9H875 184 aaPredicted RBP21.37■■□□□ 1.01
DDX55-201ENST00000238146 TCOF1Q13428 1488 aaKnown RBP21.37■■□□□ 1.01
DDX55-201ENST00000238146 NESP48681 1621 aa21.37■■□□□ 1.01
DDX55-201ENST00000238146 L3MBTL2Q969R5 705 aa21.36■■□□□ 1.01
DDX55-201ENST00000238146 GCC2Q8IWJ2 1684 aa21.36■■□□□ 1.01
DDX55-201ENST00000238146 TDRD9Q8NDG6 1382 aaKnown RBP21.36■■□□□ 1.01
DDX55-201ENST00000238146 NCOA1Q15788 1441 aa21.35■■□□□ 1.01
DDX55-201ENST00000238146 MPHOSPH9Q99550 1183 aa21.35■■□□□ 1.01
DDX55-201ENST00000238146 AKNAQ7Z591 1439 aa21.34■■□□□ 1.01
DDX55-201ENST00000238146 KDM6BO15054 1643 aa21.34■■□□□ 1.01
DDX55-201ENST00000238146 CCDC7Q96M83 1385 aa21.34■■□□□ 1.01
DDX55-201ENST00000238146 ERICH6Q7L0X2 663 aa21.33■■□□□ 1.01
DDX55-201ENST00000238146 FAM9BQ8IZU0 186 aa21.33■■□□□ 1.01
DDX55-201ENST00000238146 ZBED9Q6R2W3 1325 aa21.31■■□□□ 1
DDX55-201ENST00000238146 ABCA5Q8WWZ7 1642 aa21.31■■□□□ 1
DDX55-201ENST00000238146 MRS2Q9HD23 443 aa21.31■■□□□ 1
DDX55-201ENST00000238146 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
DDX55-201ENST00000238146 GAPVD1Q14C86 1478 aa21.3■■□□□ 1
DDX55-201ENST00000238146 FOXD1Q16676 465 aa21.29■■□□□ 1
DDX55-201ENST00000238146 B4GALNT3Q6L9W6 998 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms