RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 NISCHQ9Y2I1 1504 aa30.92■■■□□ 2.54
DDX55-201ENST00000238146 SHROOM4Q9ULL8 1493 aa26.76■■□□□ 1.87
DDX55-201ENST00000238146 SUPT5HO00267 1087 aaKnown RBP26.47■■□□□ 1.83
DDX55-201ENST00000238146 ZCCHC6Q5VYS8 1495 aaKnown RBP26.24■■□□□ 1.79
DDX55-201ENST00000238146 CCDC180Q9P1Z9 1646 aa25.99■■□□□ 1.75
DDX55-201ENST00000238146 MYO15BQ96JP2 1530 aa25.97■■□□□ 1.75
DDX55-201ENST00000238146 CHIC1Q5VXU3 224 aa25.96■■□□□ 1.75
DDX55-201ENST00000238146 HRCP23327 699 aa25.94■■□□□ 1.74
DDX55-201ENST00000238146 PCGF6Q9BYE7 350 aa25.62■■□□□ 1.69
DDX55-201ENST00000238146 DCAF8L2P0C7V8 631 aa25.57■■□□□ 1.68
DDX55-201ENST00000238146 DCAF1Q9Y4B6 1507 aa25.36■■□□□ 1.65
DDX55-201ENST00000238146 PPARGC1BQ86YN6 1023 aaKnown RBP25.36■■□□□ 1.65
DDX55-201ENST00000238146 LOC105371045A0A1W2PR82 267 aa25.23■■□□□ 1.63
DDX55-201ENST00000238146 TRIM26Q12899 539 aaPredicted RBP25.01■■□□□ 1.59
DDX55-201ENST00000238146 ABCC9O60706 1549 aa24.83■■□□□ 1.57
DDX55-201ENST00000238146 RSF1Q96T23 1441 aaPredicted RBP24.68■■□□□ 1.54
DDX55-201ENST00000238146 ZEB1P37275 1124 aaPredicted RBP24.64■■□□□ 1.54
DDX55-201ENST00000238146 TRIM41Q8WV44 630 aa24.59■■□□□ 1.53
DDX55-201ENST00000238146 SCRIBQ14160 1630 aa24.51■■□□□ 1.51
DDX55-201ENST00000238146 RB1CC1Q8TDY2 1594 aa24.47■■□□□ 1.51
DDX55-201ENST00000238146 FAM9AQ8IZU1 332 aaPredicted RBP24.45■■□□□ 1.5
DDX55-201ENST00000238146 EHMT2Q96KQ7 1210 aa24.24■■□□□ 1.47
DDX55-201ENST00000238146 PELP1Q8IZL8 1130 aaKnown RBP24.2■■□□□ 1.47
DDX55-201ENST00000238146 SCAF1Q9H7N4 1312 aaKnown RBP24.2■■□□□ 1.47
DDX55-201ENST00000238146 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.45
DDX55-201ENST00000238146 MROH2BQ7Z745 1585 aa24.08■■□□□ 1.45
DDX55-201ENST00000238146 WIZO95785 1651 aa23.96■■□□□ 1.43
DDX55-201ENST00000238146 NACADO15069 1562 aa23.96■■□□□ 1.43
DDX55-201ENST00000238146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.94■■□□□ 1.42
DDX55-201ENST00000238146 CCER1Q8TC90 406 aaPredicted RBP23.89■■□□□ 1.41
DDX55-201ENST00000238146 EIF4G1Q04637 1599 aaKnown RBP23.83■■□□□ 1.41
DDX55-201ENST00000238146 BAZ1AQ9NRL2 1556 aaPredicted RBP23.82■■□□□ 1.4
DDX55-201ENST00000238146 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
DDX55-201ENST00000238146 NEUROD1Q13562 356 aa23.75■■□□□ 1.39
DDX55-201ENST00000238146 WRNQ14191 1432 aaPredicted RBP eCLIP23.69■■□□□ 1.38
DDX55-201ENST00000238146 DIEXFQ68CQ4 756 aaKnown RBP23.69■■□□□ 1.38
DDX55-201ENST00000238146 CCDC88BA6NC98 1476 aa23.63■■□□□ 1.37
DDX55-201ENST00000238146 ABCC8Q09428 1581 aa23.61■■□□□ 1.37
DDX55-201ENST00000238146 CEP162Q5TB80 1403 aa23.6■■□□□ 1.37
DDX55-201ENST00000238146 TTBK1Q5TCY1 1321 aaPredicted RBP23.57■■□□□ 1.36
DDX55-201ENST00000238146 CENPBP07199 599 aaPredicted RBP23.56■■□□□ 1.36
DDX55-201ENST00000238146 TOP2AP11388 1531 aaKnown RBP23.56■■□□□ 1.36
DDX55-201ENST00000238146 GTF3C3Q9Y5Q9 886 aa23.55■■□□□ 1.36
DDX55-201ENST00000238146 TNIKQ9UKE5 1360 aa23.53■■□□□ 1.36
DDX55-201ENST00000238146 SOGA1O94964 1423 aa23.51■■□□□ 1.35
DDX55-201ENST00000238146 SMARCA2P51531 1590 aa23.47■■□□□ 1.35
DDX55-201ENST00000238146 SMARCA4P51532 1647 aa23.43■■□□□ 1.34
DDX55-201ENST00000238146 CSRNP3Q8WYN3 585 aa23.41■■□□□ 1.34
DDX55-201ENST00000238146 EEA1Q15075 1411 aa23.4■■□□□ 1.34
DDX55-201ENST00000238146 ZNF316A6NFI3 1004 aaPredicted RBP23.38■■□□□ 1.33
DDX55-201ENST00000238146 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
DDX55-201ENST00000238146 UBTFP17480 764 aaKnown RBP23.36■■□□□ 1.33
DDX55-201ENST00000238146 GOLGA3Q08378 1498 aa23.29■■□□□ 1.32
DDX55-201ENST00000238146 YTHDC1Q96MU7 727 aaKnown RBP23.16■■□□□ 1.3
DDX55-201ENST00000238146 HNRNPUL2Q1KMD3 747 aaKnown RBP23.14■■□□□ 1.29
DDX55-201ENST00000238146 UNC13AQ9UPW8 1703 aa23.14■■□□□ 1.29
DDX55-201ENST00000238146 MIER1Q8N108 512 aa23.13■■□□□ 1.29
DDX55-201ENST00000238146 CEP164Q9UPV0 1460 aa23.11■■□□□ 1.29
DDX55-201ENST00000238146 MYT1Q01538 1121 aa23.09■■□□□ 1.29
DDX55-201ENST00000238146 KIF21BO75037 1637 aa23.06■■□□□ 1.28
DDX55-201ENST00000238146 CLIP1P30622 1438 aa23.06■■□□□ 1.28
DDX55-201ENST00000238146 VPS8Q8N3P4 1428 aa23.02■■□□□ 1.28
DDX55-201ENST00000238146 SYNJ1O43426 1573 aa23.02■■□□□ 1.28
DDX55-201ENST00000238146 PEG3Q9GZU2 1588 aa22.95■■□□□ 1.26
DDX55-201ENST00000238146 BAZ1BQ9UIG0 1483 aaKnown RBP22.93■■□□□ 1.26
DDX55-201ENST00000238146 APLP2Q06481 763 aa22.92■■□□□ 1.26
DDX55-201ENST00000238146 RAPGEF2Q9Y4G8 1499 aa22.9■■□□□ 1.26
DDX55-201ENST00000238146 PABPN1Q86U42 306 aaKnown RBP eCLIP22.89■■□□□ 1.26
DDX55-201ENST00000238146 BICRAQ9NZM4 1560 aa22.87■■□□□ 1.25
DDX55-201ENST00000238146 RANGAP1P46060 587 aaPredicted RBP22.8■■□□□ 1.24
DDX55-201ENST00000238146 CLSPNQ9HAW4 1339 aa22.79■■□□□ 1.24
DDX55-201ENST00000238146 ATAD2BQ9ULI0 1458 aa22.75■■□□□ 1.23
DDX55-201ENST00000238146 DHX57Q6P158 1386 aaKnown RBP22.75■■□□□ 1.23
DDX55-201ENST00000238146 TOP2BQ02880 1626 aa22.67■■□□□ 1.22
DDX55-201ENST00000238146 ARAP1Q96P48 1450 aa22.63■■□□□ 1.21
DDX55-201ENST00000238146 KANK4Q5T7N3 995 aaPredicted RBP22.62■■□□□ 1.21
DDX55-201ENST00000238146 PRXQ9BXM0 1461 aa22.62■■□□□ 1.21
DDX55-201ENST00000238146 ERICH3Q5RHP9 1530 aa22.61■■□□□ 1.21
DDX55-201ENST00000238146 SUPT16HQ9Y5B9 1047 aaKnown RBP22.58■■□□□ 1.2
DDX55-201ENST00000238146 BIVM-ERCC5R4GMW8 1640 aa22.56■■□□□ 1.2
DDX55-201ENST00000238146 RRBP1Q9P2E9 1410 aaKnown RBP22.56■■□□□ 1.2
DDX55-201ENST00000238146 CUX2O14529 1486 aa22.5■■□□□ 1.19
DDX55-201ENST00000238146 CCNB3Q8WWL7 1395 aa22.44■■□□□ 1.18
DDX55-201ENST00000238146 KIF27Q86VH2 1401 aa22.39■■□□□ 1.17
DDX55-201ENST00000238146 CUX1P39880 1505 aa22.38■■□□□ 1.17
DDX55-201ENST00000238146 ARHGAP35Q9NRY4 1499 aa22.37■■□□□ 1.17
DDX55-201ENST00000238146 ITGAEP38570 1179 aa22.34■■□□□ 1.17
DDX55-201ENST00000238146 TSHZ2Q9NRE2 1034 aa22.34■■□□□ 1.17
DDX55-201ENST00000238146 KCNH8Q96L42 1107 aa22.31■■□□□ 1.16
DDX55-201ENST00000238146 RAB3GAP2Q9H2M9 1393 aa22.31■■□□□ 1.16
DDX55-201ENST00000238146 MAPKBP1O60336 1514 aa22.29■■□□□ 1.16
DDX55-201ENST00000238146 NCAPD3P42695 1498 aa22.22■■□□□ 1.15
DDX55-201ENST00000238146 HMGXB3Q12766 1538 aa22.21■■□□□ 1.15
DDX55-201ENST00000238146 SETD5Q9C0A6 1442 aa22.19■■□□□ 1.14
DDX55-201ENST00000238146 TIAM1Q13009 1591 aa22.18■■□□□ 1.14
DDX55-201ENST00000238146 MAP3K1Q13233 1512 aa22.18■■□□□ 1.14
DDX55-201ENST00000238146 CFTRP13569 1480 aa22.17■■□□□ 1.14
DDX55-201ENST00000238146 DDX10Q13206 875 aaKnown RBP22.14■■□□□ 1.14
DDX55-201ENST00000238146 IGF1RP08069 1367 aa22.14■■□□□ 1.13
DDX55-201ENST00000238146 WDR97A6NE52 1622 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms