RNA–Protein interactions for RNA: ENSMUST00000113388.2

Chm-202, Transcript of Rab proteins geranylgeranyltransferase component A 1, mousemouse

TSL 1 (best) BASIC

Gene Chm, Length 4,749 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Chm-202ENSMUST00000113388 Gtf3c5Q8R2T8 520 aa10.35□□□□□ -0.75
Chm-202ENSMUST00000113388 Tnnt3Q9QZ47 272 aa10.34□□□□□ -0.75
Chm-202ENSMUST00000113388 Eif5bQ05D44 1216 aaKnown RBP10.34□□□□□ -0.75
Chm-202ENSMUST00000113388 Hdac5Q9Z2V6 1113 aa10.34□□□□□ -0.75
Chm-202ENSMUST00000113388 Ube2uB1AUC4 352 aa10.32□□□□□ -0.76
Chm-202ENSMUST00000113388 TnnQ80Z71 1560 aa10.32□□□□□ -0.76
Chm-202ENSMUST00000113388 Anp32aO35381 247 aa10.32□□□□□ -0.76
Chm-202ENSMUST00000113388 NefmP08553 848 aa10.3□□□□□ -0.76
Chm-202ENSMUST00000113388 PogzQ8BZH4 1409 aaKnown RBP10.3□□□□□ -0.76
Chm-202ENSMUST00000113388 Duox2A2AQ99 1517 aa10.29□□□□□ -0.76
Chm-202ENSMUST00000113388 Myt1lP97500 1187 aa10.29□□□□□ -0.76
Chm-202ENSMUST00000113388 Crocc2F6XLV1 1638 aa10.29□□□□□ -0.76
Chm-202ENSMUST00000113388 Ccdc9Q8VC31 543 aaKnown RBP10.26□□□□□ -0.77
Chm-202ENSMUST00000113388 Grin2bQ01097 1482 aa10.25□□□□□ -0.77
Chm-202ENSMUST00000113388 Rad54l2Q99NG0 1466 aa10.25□□□□□ -0.77
Chm-202ENSMUST00000113388 Znf316Q6PGE4 1016 aa10.22□□□□□ -0.77
Chm-202ENSMUST00000113388 Mapk8ip2Q9ERE9 830 aa10.22□□□□□ -0.77
Chm-202ENSMUST00000113388 Anp32bQ9EST5 272 aaKnown RBP10.22□□□□□ -0.77
Chm-202ENSMUST00000113388 Irx3P81067 507 aa10.22□□□□□ -0.77
Chm-202ENSMUST00000113388 PtprkP35822 1457 aa10.21□□□□□ -0.77
Chm-202ENSMUST00000113388 Fgd1P52734 960 aa10.2□□□□□ -0.78
Chm-202ENSMUST00000113388 Pabpn1Q8CCS6 302 aaKnown RBP10.2□□□□□ -0.78
Chm-202ENSMUST00000113388 Gtf3c3Q3TMP1 882 aa10.19□□□□□ -0.78
Chm-202ENSMUST00000113388 Ift140E9PY46 1464 aa10.19□□□□□ -0.78
Chm-202ENSMUST00000113388 Eif4g3Q80XI3 1579 aaKnown RBP10.19□□□□□ -0.78
Chm-202ENSMUST00000113388 Top2aQ01320 1528 aaKnown RBP10.18□□□□□ -0.78
Chm-202ENSMUST00000113388 Sall2Q9QX96 1004 aa10.18□□□□□ -0.78
Chm-202ENSMUST00000113388 Samd9lQ69Z37 1561 aa10.18□□□□□ -0.78
Chm-202ENSMUST00000113388 Disp1Q3TDN0 1521 aa10.17□□□□□ -0.78
Chm-202ENSMUST00000113388 HrcG5E8J6 738 aa10.17□□□□□ -0.78
Chm-202ENSMUST00000113388 Efcab5A0JP43 1406 aa10.16□□□□□ -0.78
Chm-202ENSMUST00000113388 Arhgap27A2AB59 869 aa10.14□□□□□ -0.79
Chm-202ENSMUST00000113388 AknaQ80VW7 1404 aa10.14□□□□□ -0.79
Chm-202ENSMUST00000113388 Dnajc5P60904 198 aa10.14□□□□□ -0.79
Chm-202ENSMUST00000113388 Fkbp15Q6P9Q6 1216 aaKnown RBP10.14□□□□□ -0.79
Chm-202ENSMUST00000113388 Taok2Q6ZQ29 1240 aa10.13□□□□□ -0.79
Chm-202ENSMUST00000113388 Shroom4Q1W617 1475 aa10.12□□□□□ -0.79
Chm-202ENSMUST00000113388 DaxxO35613 739 aa10.11□□□□□ -0.79
Chm-202ENSMUST00000113388 Plcd4Q8K3R3 807 aa10.11□□□□□ -0.79
Chm-202ENSMUST00000113388 Rusc2Q80U22 1514 aa10.1□□□□□ -0.79
Chm-202ENSMUST00000113388 NrkQ9R0G8 1455 aa10.1□□□□□ -0.79
Chm-202ENSMUST00000113388 Grin2aP35436 1464 aa10.1□□□□□ -0.79
Chm-202ENSMUST00000113388 Ap3b1Q9Z1T1 1105 aa10.09□□□□□ -0.79
Chm-202ENSMUST00000113388 NeflP08551 543 aa10.09□□□□□ -0.79
Chm-202ENSMUST00000113388 Rapgef2Q8CHG7 1496 aa10.08□□□□□ -0.8
Chm-202ENSMUST00000113388 Stra8P70278 393 aa10.07□□□□□ -0.8
Chm-202ENSMUST00000113388 Cc2d2bA0A286YDU8 1405 aa10.07□□□□□ -0.8
Chm-202ENSMUST00000113388 Hsp90aa1P07901 733 aaKnown RBP10.07□□□□□ -0.8
Chm-202ENSMUST00000113388 Nup160Q9Z0W3 1402 aaKnown RBP10.06□□□□□ -0.8
Chm-202ENSMUST00000113388 Magi3Q9EQJ9 1476 aa10.05□□□□□ -0.8
Chm-202ENSMUST00000113388 Ppargc1bQ8VHJ7 1014 aa10.04□□□□□ -0.8
Chm-202ENSMUST00000113388 TimelessQ9R1X4 1197 aa10.04□□□□□ -0.8
Chm-202ENSMUST00000113388 Upf2A2AT37 1269 aaKnown RBP10.03□□□□□ -0.8
Chm-202ENSMUST00000113388 Pla2r1Q62028 1487 aa10.03□□□□□ -0.8
Chm-202ENSMUST00000113388 Fgd6Q69ZL1 1399 aa10.03□□□□□ -0.8
Chm-202ENSMUST00000113388 Rtn4Q99P72 1162 aaKnown RBP10.02□□□□□ -0.8
Chm-202ENSMUST00000113388 SynmQ70IV5 1561 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 Rpap1Q80TE0 1409 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 ArxO35085 564 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 Znf326O88291 580 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 Q8BT18 775 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 Podxl2Q8CAE9 603 aa10.02□□□□□ -0.81
Chm-202ENSMUST00000113388 Ccdc27Q3V036 639 aa10.01□□□□□ -0.81
Chm-202ENSMUST00000113388 Shroom2A2ALU4 1481 aa10.01□□□□□ -0.81
Chm-202ENSMUST00000113388 Setd1bQ8CFT2 1985 aa10□□□□□ -0.81
Chm-202ENSMUST00000113388 AqrQ8CFQ3 1481 aaKnown RBP10□□□□□ -0.81
Chm-202ENSMUST00000113388 Mroh2bQ7M6Y6 1581 aa9.99□□□□□ -0.81
Chm-202ENSMUST00000113388 Cep162Q6ZQ06 1403 aa9.98□□□□□ -0.81
Chm-202ENSMUST00000113388 PxdnQ3UQ28 1475 aa9.97□□□□□ -0.81
Chm-202ENSMUST00000113388 Arhgap35Q91YM2 1499 aa9.97□□□□□ -0.81
Chm-202ENSMUST00000113388 Clip1Q922J3 1391 aa9.97□□□□□ -0.81
Chm-202ENSMUST00000113388 EprsQ8CGC7 1512 aaKnown RBP9.96□□□□□ -0.81
Chm-202ENSMUST00000113388 Soga1E1U8D0 1418 aa9.96□□□□□ -0.81
Chm-202ENSMUST00000113388 Carmil1Q6EDY6 1374 aa9.96□□□□□ -0.82
Chm-202ENSMUST00000113388 Neo1P97798 1493 aa9.96□□□□□ -0.82
Chm-202ENSMUST00000113388 Gm156Q58A37 223 aa9.94□□□□□ -0.82
Chm-202ENSMUST00000113388 WizO88286 1684 aaKnown RBP9.94□□□□□ -0.82
Chm-202ENSMUST00000113388 Col17a1Q07563 1470 aa9.93□□□□□ -0.82
Chm-202ENSMUST00000113388 Arid3cA6PWV5 409 aa9.93□□□□□ -0.82
Chm-202ENSMUST00000113388 SafbD3YXK2 937 aaKnown RBP9.93□□□□□ -0.82
Chm-202ENSMUST00000113388 Pbrm1Q8BSQ9 1634 aaKnown RBP9.93□□□□□ -0.82
Chm-202ENSMUST00000113388 ClspnQ80YR7 1315 aa9.93□□□□□ -0.82
Chm-202ENSMUST00000113388 Lmod2Q3UHZ5 550 aa9.92□□□□□ -0.82
Chm-202ENSMUST00000113388 Gapvd1Q6PAR5 1458 aa9.92□□□□□ -0.82
Chm-202ENSMUST00000113388 Ythdc2B2RR83 1445 aaKnown RBP9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 WrnO09053 1401 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 Abcc1O35379 1528 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 CadpsQ80TJ1 1355 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 Ipo4Q8VI75 1082 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 TchhA0A0B4J1F9 1599 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 Ppp1r18Q8BQ30 594 aa9.91□□□□□ -0.82
Chm-202ENSMUST00000113388 Gm7298A0A0N4SVU1 1476 aa9.9□□□□□ -0.82
Chm-202ENSMUST00000113388 Jph4Q80WT0 628 aa9.89□□□□□ -0.83
Chm-202ENSMUST00000113388 Gm14025A2AP89 1413 aa9.88□□□□□ -0.83
Chm-202ENSMUST00000113388 Dnttip2Q8R2M2 758 aaKnown RBP9.87□□□□□ -0.83
Chm-202ENSMUST00000113388 Zfp777B9EKF4 885 aa9.87□□□□□ -0.83
Chm-202ENSMUST00000113388 Cux1P53564 1515 aa9.87□□□□□ -0.83
Chm-202ENSMUST00000113388 Setd5Q5XJV7 1441 aa9.87□□□□□ -0.83
Chm-202ENSMUST00000113388 Adgrl3Q80TS3 1537 aa9.86□□□□□ -0.83
Chm-202ENSMUST00000113388 Abca16E9PWJ7 1678 aa9.86□□□□□ -0.83
Retrieved 100 of 22,080 RNA–protein pairs in 11.7 ms