RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	AIM26	P32858	118 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	PGM1	P33401	570 aa	Known RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	PHO88	P38264	188 aa	Predicted RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	SPP381	P38282	291 aa	Predicted RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	PIH1	P38768	344 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	SMF1	P38925	575 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	PNT1	P38969	423 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	RSP5	P39940	809 aa	Known RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	SIP5	P40210	489 aa	Known RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	SHQ1	P40486	507 aa	Predicted RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	PFD1	P46988	109 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	YJR039W	P47107	1121 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	LIF1	P53150	421 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	CNM67	P53865	581 aa	Known RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	UME1	Q03010	460 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	SPO19	Q03029	223 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	YML037C	Q03703	340 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	POB3	Q04636	552 aa	Known RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	TCO89	Q08921	799 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	TAF10	Q12030	206 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	CWC2	Q12046	339 aa	Predicted RBP	4.66	□□□□□ -1.66
CDC42	YLR229C	CSR2	Q12734	1121 aa		4.66	□□□□□ -1.66
CDC42	YLR229C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.65	□□□□□ -1.67	not detected
CDC42	YLR229C	PPR1	P07272	904 aa	Predicted RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	SPS1	P08458	490 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	SSB1	P11484	613 aa	Known RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	PHO8	P11491	566 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	CLN3	P13365	580 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	APL1	P27351	700 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	BUD14	P27637	709 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	TFC3	P34111	1160 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	SEG2	P34250	1132 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	RRP14	P36080	434 aa	Known RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	HEL1	P36113	551 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	YHR020W	P38708	688 aa	Known RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	PTC7	P38797	343 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	SSB2	P40150	613 aa	Known RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	NBP1	P52919	319 aa	Predicted RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	PXR1	P53335	271 aa	Predicted RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	NCS2	P53923	493 aa	Predicted RBP	4.65	□□□□□ -1.67
CDC42	YLR229C	VTI1	Q04338	217 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	YDR338C	Q05497	695 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	YPL277C	Q08989	487 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	MED1	Q12321	566 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	RMP1	Q12530	201 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	YLR278C	Q05854	1341 aa		4.65	□□□□□ -1.67
CDC42	YLR229C	CAN1	P04817	590 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	TOM70	P07213	617 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	SRD1	P09007	221 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	DAL7	P21826	554 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	RAD57	P25301	460 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	PER1	P25625	357 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	TGL1	P34163	548 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	OCT1	P35999	772 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	UBP11	P36026	717 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	YKR018C	P36114	725 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	UBP5	P39944	805 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	MRX1	P40050	688 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	ULP2	P40537	1034 aa	Predicted RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	GTS1	P40956	396 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	SEC26	P41810	973 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	GPD2	P41911	440 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	IES1	P43579	692 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	VID30	P53076	958 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	DIP5	P53388	608 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	GTR1	Q00582	310 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	NGL3	Q03210	505 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	SPC24	Q04477	213 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	TMA64	Q04600	565 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	PHM6	Q05637	104 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	SPH1	Q06160	661 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	YDL057W	Q07379	328 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	WHI4	Q07655	649 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	GUD1	Q07729	489 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	CMS1	Q07897	291 aa	Known RBP	4.64	□□□□□ -1.67
CDC42	YLR229C	RSC58	Q07979	502 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	MED7	Q08278	222 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	DAS2	Q12084	232 aa		4.64	□□□□□ -1.67
CDC42	YLR229C	TY1B-A	O13527	1196 aa	Known RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	PGK1	P00560	416 aa	Known RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	CIT2	P08679	460 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	FBP1	P09201	348 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	SAM1	P10659	382 aa	Known RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	PCK1	P10963	549 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	PRP22	P24384	1145 aa	Known RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	CLB4	P24871	460 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	THI4	P32318	326 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	HXT1	P32465	570 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	TIM23	P32897	222 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	XRS2	P33301	854 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	NIP100	P33420	868 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	YRO2	P38079	344 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	BAP2	P38084	609 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	LIN1	P38852	340 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	FIS1	P40515	155 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	OYE3	P41816	400 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
CDC42	YLR229C	RPC17	P47076	161 aa		4.63	□□□□□ -1.67
CDC42	YLR229C	CCM1	P48237	864 aa	Predicted RBP	4.63	□□□□□ -1.67
CDC42	YLR229C	TOF1	P53840	1238 aa		4.63	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms