RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W SMC5Q08204 1093 aa6.45□□□□□ -1.38
ATG4YNL223W MSC6Q08818 692 aaKnown RBP6.45□□□□□ -1.38
ATG4YNL223W TRM11Q12463 433 aa6.45□□□□□ -1.38
ATG4YNL223W YDR461C-AQ2V2P7 80 aa6.45□□□□□ -1.38
ATG4YNL223W TOM70P07213 617 aaKnown RBP6.44□□□□□ -1.38
ATG4YNL223W PET111P08468 800 aa6.44□□□□□ -1.38
ATG4YNL223W CHS2P14180 963 aa6.44□□□□□ -1.38
ATG4YNL223W RAD57P25301 460 aa6.44□□□□□ -1.38
ATG4YNL223W RGT1P32862 1170 aa6.44□□□□□ -1.38
ATG4YNL223W NIP100P33420 868 aa6.44□□□□□ -1.38
ATG4YNL223W EAP1P36041 632 aaKnown RBP6.44□□□□□ -1.38
ATG4YNL223W MCX1P38323 520 aaPredicted RBP6.44□□□□□ -1.38
ATG4YNL223W RSC30P38781 883 aa6.44□□□□□ -1.38
ATG4YNL223W SMC2P38989 1170 aaKnown RBP6.44□□□□□ -1.38
ATG4YNL223W SDS3P40505 327 aa6.44□□□□□ -1.38
ATG4YNL223W CEP3P40969 608 aa6.44□□□□□ -1.38
ATG4YNL223W COS5P47187 383 aa6.44□□□□□ -1.38
ATG4YNL223W SCS3P53012 380 aa6.44□□□□□ -1.38
ATG4YNL223W BOP3P53958 396 aa6.44□□□□□ -1.38
ATG4YNL223W TIM8P57744 87 aa6.44□□□□□ -1.38
ATG4YNL223W DON1Q05610 365 aa6.44□□□□□ -1.38
ATG4YNL223W YPR078CQ06813 372 aa6.44□□□□□ -1.38
ATG4YNL223W GPI13Q07830 1017 aa6.44□□□□□ -1.38
ATG4YNL223W MLH2Q07980 695 aa6.44□□□□□ -1.38
ATG4YNL223W CDC53Q12018 815 aaKnown RBP6.44□□□□□ -1.38
ATG4YNL223W IOC2Q12072 812 aa6.44□□□□□ -1.38
ATG4YNL223W MCM16Q12262 181 aa6.44□□□□□ -1.38
ATG4YNL223W SWI6P09959 803 aa6.43□□□□□ -1.38
ATG4YNL223W SMC1P32908 1225 aa6.43□□□□□ -1.38
ATG4YNL223W VPS35P34110 944 aa6.43□□□□□ -1.38
ATG4YNL223W YKL023WP36103 277 aaKnown RBP6.43□□□□□ -1.38
ATG4YNL223W ETP1P38748 585 aaKnown RBP6.43□□□□□ -1.38
ATG4YNL223W MMM1P41800 426 aa6.43□□□□□ -1.38
ATG4YNL223W MDR1P53258 950 aa6.43□□□□□ -1.38
ATG4YNL223W RTT102P53330 157 aa6.43□□□□□ -1.38
ATG4YNL223W SML1Q04964 104 aa6.43□□□□□ -1.38
ATG4YNL223W CSR1Q06705 408 aaKnown RBP6.43□□□□□ -1.38
ATG4YNL223W IES4Q08561 116 aa6.43□□□□□ -1.38
ATG4YNL223W YLL058WQ12198 575 aa6.43□□□□□ -1.38
ATG4YNL223W STE11P23561 717 aa6.42□□□□□ -1.38
ATG4YNL223W SSD1P24276 1250 aaKnown RBP RIP-Chip data6.42□□□□□ -1.38not detected
ATG4YNL223W KIN82P25341 720 aa6.42□□□□□ -1.38
ATG4YNL223W EFT1P32324 842 aaKnown RBP6.42□□□□□ -1.38
ATG4YNL223W IRE1P32361 1115 aa6.42□□□□□ -1.38
ATG4YNL223W HXT1P32465 570 aa6.42□□□□□ -1.38
ATG4YNL223W MUD1P32605 298 aaKnown RBP6.42□□□□□ -1.38
ATG4YNL223W MXR1P40029 184 aa6.42□□□□□ -1.38
ATG4YNL223W SMC3P47037 1230 aa6.42□□□□□ -1.38
ATG4YNL223W ATG1P53104 897 aa6.42□□□□□ -1.38
ATG4YNL223W UBP3Q01477 912 aaKnown RBP RIP-Chip data6.42□□□□□ -1.38not detected
ATG4YNL223W VTC3Q02725 835 aa6.42□□□□□ -1.38
ATG4YNL223W VPS60Q03390 229 aa6.42□□□□□ -1.38
ATG4YNL223W VAC14Q06708 880 aa6.42□□□□□ -1.38
ATG4YNL223W OPY2Q06810 360 aa6.42□□□□□ -1.38
ATG4YNL223W ECM29P38737 1868 aa6.42□□□□□ -1.38
ATG4YNL223W PRE10P21242 288 aaKnown RBP RIP-Chip data6.41□□□□□ -1.38not detected
ATG4YNL223W RME1P32338 300 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W TIM23P32897 222 aa6.41□□□□□ -1.38
ATG4YNL223W JNM1P36224 373 aa6.41□□□□□ -1.38
ATG4YNL223W FLR1P38124 548 aa6.41□□□□□ -1.38
ATG4YNL223W EAF5P39995 279 aa6.41□□□□□ -1.38
ATG4YNL223W NDC80P40460 691 aa6.41□□□□□ -1.38
ATG4YNL223W YNL146WP53906 100 aa6.41□□□□□ -1.38
ATG4YNL223W ESBP6P53918 673 aa6.41□□□□□ -1.38
ATG4YNL223W NGL3Q03210 505 aa6.41□□□□□ -1.38
ATG4YNL223W SOV1Q04748 898 aa6.41□□□□□ -1.38
ATG4YNL223W YLR225CQ05948 407 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W YLR001CQ07895 862 aa6.41□□□□□ -1.38
ATG4YNL223W DAS2Q12084 232 aa6.41□□□□□ -1.38
ATG4YNL223W SFI1Q12369 946 aa6.41□□□□□ -1.38
ATG4YNL223W YDL206WQ12424 762 aa6.41□□□□□ -1.38
ATG4YNL223W NOP58Q12499 511 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W TRP2P00899 507 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W POX1P13711 748 aa6.41□□□□□ -1.38
ATG4YNL223W RAD54P32863 898 aa6.41□□□□□ -1.38
ATG4YNL223W TCD1P38756 429 aa6.41□□□□□ -1.38
ATG4YNL223W SET5P38890 526 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W YMR124WP39523 943 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W BUD16P39988 312 aa6.41□□□□□ -1.38
ATG4YNL223W NPP2P39997 493 aa6.41□□□□□ -1.38
ATG4YNL223W PSP2P50109 593 aaKnown RBP6.41□□□□□ -1.38
ATG4YNL223W ENV11P53246 860 aa6.41□□□□□ -1.38
ATG4YNL223W SIL1Q08199 421 aa6.41□□□□□ -1.38
ATG4YNL223W MET7Q08645 548 aa6.41□□□□□ -1.38
ATG4YNL223W SLX4Q12098 748 aa6.41□□□□□ -1.38
ATG4YNL223W OSW2Q12202 724 aa6.41□□□□□ -1.38
ATG4YNL223W CKI1P20485 582 aa6.4□□□□□ -1.39
ATG4YNL223W KIP1P28742 1111 aa6.4□□□□□ -1.39
ATG4YNL223W SRB4P32569 687 aa6.4□□□□□ -1.39
ATG4YNL223W EDS1P38073 919 aa6.4□□□□□ -1.39
ATG4YNL223W REI1P38344 393 aaPredicted RBP6.4□□□□□ -1.39
ATG4YNL223W KSP1P38691 1029 aaKnown RBP6.4□□□□□ -1.39
ATG4YNL223W HXT8P40886 569 aa6.4□□□□□ -1.39
ATG4YNL223W HSH155P49955 971 aaKnown RBP6.4□□□□□ -1.39
ATG4YNL223W ORC5P50874 479 aa6.4□□□□□ -1.39
ATG4YNL223W UTP14Q04500 899 aaKnown RBP6.4□□□□□ -1.39
ATG4YNL223W TSR1Q07381 788 aaKnown RBP6.4□□□□□ -1.39
ATG4YNL223W LDB19Q12502 818 aa6.4□□□□□ -1.39
ATG4YNL223W TIF6Q12522 245 aaKnown RBP6.4□□□□□ -1.39
ATG4YNL223W MAS2P11914 482 aa6.39□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 50.4 ms