RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C NOC3Q07896 663 aaPredicted RBP11.48□□□□□ -0.57
SHM2YLR058C RME1P32338 300 aaKnown RBP11.47□□□□□ -0.57
SHM2YLR058C YET1P35723 206 aa11.47□□□□□ -0.57
SHM2YLR058C MPE1P35728 441 aaKnown RBP11.47□□□□□ -0.57
SHM2YLR058C UBP13P38187 747 aa11.47□□□□□ -0.57
SHM2YLR058C YOR131CQ12486 218 aa11.47□□□□□ -0.57
SHM2YLR058C YSC83P32792 385 aa11.46□□□□□ -0.57
SHM2YLR058C GPT2P36148 743 aa11.46□□□□□ -0.57
SHM2YLR058C AFG3P39925 761 aa11.46□□□□□ -0.57
SHM2YLR058C VID30P53076 958 aa11.46□□□□□ -0.57
SHM2YLR058C CAF130P53280 1122 aaPredicted RBP11.46□□□□□ -0.57
SHM2YLR058C YAP7Q08182 245 aa11.46□□□□□ -0.57
SHM2YLR058C RPC53P25441 422 aa11.45□□□□□ -0.58
SHM2YLR058C EFT1P32324 842 aaKnown RBP11.45□□□□□ -0.58
SHM2YLR058C EAF5P39995 279 aa11.45□□□□□ -0.58
SHM2YLR058C MED1Q12321 566 aa11.45□□□□□ -0.58
SHM2YLR058C MAK16P10962 306 aaPredicted RBP11.44□□□□□ -0.58
SHM2YLR058C UBC1P21734 215 aaKnown RBP11.44□□□□□ -0.58
SHM2YLR058C MCM2P29469 868 aa11.44□□□□□ -0.58
SHM2YLR058C MRF1P30775 413 aaPredicted RBP11.44□□□□□ -0.58
SHM2YLR058C COT1P32798 439 aa11.44□□□□□ -0.58
SHM2YLR058C UBP5P39944 805 aa11.44□□□□□ -0.58
SHM2YLR058C CCM1P48237 864 aaPredicted RBP11.44□□□□□ -0.58
SHM2YLR058C TAM41P53230 385 aa11.44□□□□□ -0.58
SHM2YLR058C DAK1P54838 584 aaKnown RBP11.44□□□□□ -0.58
SHM2YLR058C MSC2Q03455 724 aa11.44□□□□□ -0.58
SHM2YLR058C ATG11Q12527 1178 aa11.44□□□□□ -0.58
SHM2YLR058C PHO8P11491 566 aa11.43□□□□□ -0.58
SHM2YLR058C NAM7P30771 971 aaKnown RBP11.43□□□□□ -0.58
SHM2YLR058C PAH1P32567 862 aa11.43□□□□□ -0.58
SHM2YLR058C RPC25P35718 212 aa11.43□□□□□ -0.58
SHM2YLR058C AIM21P40563 679 aa11.43□□□□□ -0.58
SHM2YLR058C MGA2P40578 1113 aa11.43□□□□□ -0.58
SHM2YLR058C RTT102P53330 157 aa11.43□□□□□ -0.58
SHM2YLR058C MDM20Q12387 796 aaKnown RBP11.43□□□□□ -0.58
SHM2YLR058C SCP160P06105 1222 aaKnown RBP RIP-Chip data11.43□□□□□ -0.58 RIP-Chip
SHM2YLR058C MSH3P25336 1018 aa11.43□□□□□ -0.58
SHM2YLR058C SMY2P32909 740 aaKnown RBP11.43□□□□□ -0.58
SHM2YLR058C MNN4P36044 1178 aa11.43□□□□□ -0.58
SHM2YLR058C SAP190P36123 1033 aa11.43□□□□□ -0.58
SHM2YLR058C SPT8P38915 602 aa11.43□□□□□ -0.58
SHM2YLR058C ACF4P47129 309 aa11.43□□□□□ -0.58
SHM2YLR058C VPS62P53285 467 aa11.43□□□□□ -0.58
SHM2YLR058C COG4Q06096 861 aa11.43□□□□□ -0.58
SHM2YLR058C IES4Q08561 116 aa11.43□□□□□ -0.58
SHM2YLR058C RPS6AP0CX37 236 aaKnown RBP11.42□□□□□ -0.58
SHM2YLR058C RPS6BP0CX38 236 aaPredicted RBP11.42□□□□□ -0.58
SHM2YLR058C SNA3P14359 133 aa11.42□□□□□ -0.58
SHM2YLR058C VPS35P34110 944 aa11.42□□□□□ -0.58
SHM2YLR058C SHM1P37292 490 aaPredicted RBP11.42□□□□□ -0.58
SHM2YLR058C CTM1P38818 585 aa11.42□□□□□ -0.58
SHM2YLR058C SAD1P43589 448 aa11.42□□□□□ -0.58
SHM2YLR058C YML020WQ03722 664 aa11.42□□□□□ -0.58
SHM2YLR058C MAM3Q12296 706 aa11.42□□□□□ -0.58
SHM2YLR058C RTP1Q12751 981 aa11.42□□□□□ -0.58
SHM2YLR058C GUA1P38625 525 aaKnown RBP11.41□□□□□ -0.58
SHM2YLR058C MIP6P38760 659 aaKnown RBP11.41□□□□□ -0.58
SHM2YLR058C LCB2P40970 561 aa11.41□□□□□ -0.58
SHM2YLR058C YNL146WP53906 100 aa11.41□□□□□ -0.58
SHM2YLR058C SPO75Q07798 868 aa11.41□□□□□ -0.58
SHM2YLR058C SSD1P24276 1250 aaKnown RBP RIP-Chip data11.4□□□□□ -0.58not detected
SHM2YLR058C SEC65P29478 273 aa11.4□□□□□ -0.58
SHM2YLR058C VPS75P53853 264 aa11.4□□□□□ -0.58
SHM2YLR058C VTC3Q02725 835 aa11.4□□□□□ -0.58
SHM2YLR058C OSW2Q12202 724 aa11.4□□□□□ -0.58
SHM2YLR058C PHO13P19881 312 aa11.39□□□□□ -0.59
SHM2YLR058C SPO11P23179 398 aa11.39□□□□□ -0.59
SHM2YLR058C PXL1P36166 706 aa11.39□□□□□ -0.59
SHM2YLR058C CDC53Q12018 815 aaKnown RBP11.39□□□□□ -0.59
SHM2YLR058C FAL1Q12099 399 aaKnown RBP11.39□□□□□ -0.59
SHM2YLR058C HIF1Q12373 385 aa11.39□□□□□ -0.59
SHM2YLR058C AFT1P22149 690 aa11.38□□□□□ -0.59
SHM2YLR058C FYV8P46949 817 aaKnown RBP11.38□□□□□ -0.59
SHM2YLR058C MLH2Q07980 695 aa11.38□□□□□ -0.59
SHM2YLR058C CWC2Q12046 339 aaPredicted RBP11.38□□□□□ -0.59
SHM2YLR058C HFI1Q12060 488 aa11.38□□□□□ -0.59
SHM2YLR058C SSB1P11484 613 aaKnown RBP11.37□□□□□ -0.59
SHM2YLR058C APL1P27351 700 aa11.37□□□□□ -0.59
SHM2YLR058C MSS51P32335 436 aa11.37□□□□□ -0.59
SHM2YLR058C DPH2P32461 534 aa11.37□□□□□ -0.59
SHM2YLR058C TMT1P32643 299 aa11.37□□□□□ -0.59
SHM2YLR058C KTR2P33550 425 aa11.37□□□□□ -0.59
SHM2YLR058C UIP5P36137 443 aa11.37□□□□□ -0.59
SHM2YLR058C LDH1P38139 375 aa11.37□□□□□ -0.59
SHM2YLR058C RTT107P38850 1070 aa11.37□□□□□ -0.59
SHM2YLR058C SSB2P40150 613 aaKnown RBP11.37□□□□□ -0.59
SHM2YLR058C JJJ3P47138 172 aa11.37□□□□□ -0.59
SHM2YLR058C STR2P47164 639 aa11.37□□□□□ -0.59
SHM2YLR058C ENV11P53246 860 aa11.37□□□□□ -0.59
SHM2YLR058C TPO2P53283 614 aa11.37□□□□□ -0.59
SHM2YLR058C CUS1Q02554 436 aaPredicted RBP11.37□□□□□ -0.59
SHM2YLR058C YDR090CQ03193 310 aa11.37□□□□□ -0.59
SHM2YLR058C VPS72Q03388 795 aa11.37□□□□□ -0.59
SHM2YLR058C VPS13Q07878 3144 aa11.37□□□□□ -0.59
SHM2YLR058C CHS2P14180 963 aa11.36□□□□□ -0.59
SHM2YLR058C MUD1P32605 298 aaKnown RBP11.36□□□□□ -0.59
SHM2YLR058C DUR3P33413 735 aa11.36□□□□□ -0.59
SHM2YLR058C EFM2P38347 419 aa11.36□□□□□ -0.59
SHM2YLR058C HFM1P51979 1187 aa11.36□□□□□ -0.59
SHM2YLR058C CUL3P53202 744 aa11.36□□□□□ -0.59
Retrieved 100 of 5,963 RNA–protein pairs in 31.4 ms