RNA–Protein interactions for RNA: YHR099W

TRA1, Transcript of Subunit of SAGA and NuA4 histone acetyltransferase complexes, yeastyeast

Gene TRA1, Length 11,235 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
TRA1YHR099W IBD2P53892 351 aa2.57□□□□□ -2
TRA1YHR099W SLU7Q02775 382 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W HFD1Q04458 532 aa2.57□□□□□ -2
TRA1YHR099W RRP40Q08285 240 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W ICL2Q12031 575 aa2.57□□□□□ -2
TRA1YHR099W VIK1Q12045 647 aa2.57□□□□□ -2
TRA1YHR099W NUP159P40477 1460 aa2.57□□□□□ -2
TRA1YHR099W RPS9AO13516 197 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W RNR2P09938 399 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W ERG9P29704 444 aa2.57□□□□□ -2
TRA1YHR099W TYS1P36421 394 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W IFA38P38286 347 aa2.57□□□□□ -2
TRA1YHR099W BIT2P38346 545 aa2.57□□□□□ -2
TRA1YHR099W RIO2P40160 425 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W UFE1P41834 346 aa2.57□□□□□ -2
TRA1YHR099W TIM54P47045 478 aa2.57□□□□□ -2
TRA1YHR099W UBA2P52488 636 aa2.57□□□□□ -2
TRA1YHR099W SKI8Q02793 397 aaPredicted RBP2.57□□□□□ -2
TRA1YHR099W WRS1Q12109 432 aaKnown RBP2.57□□□□□ -2
TRA1YHR099W GPA1P08539 472 aa2.56□□□□□ -2
TRA1YHR099W YGL041W-AP0C5N3 154 aa2.56□□□□□ -2
TRA1YHR099W AAP1P37898 856 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W VMA13P41807 478 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W LOC1P43586 204 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W YGL140CP53120 1219 aa2.56□□□□□ -2
TRA1YHR099W PRP43P53131 767 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W GRX5Q02784 150 aa2.56□□□□□ -2
TRA1YHR099W UBX5Q06682 500 aa2.56□□□□□ -2
TRA1YHR099W MSC6Q08818 692 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W MDM20Q12387 796 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W YBR085C-AO43137 85 aa2.56□□□□□ -2
TRA1YHR099W PHO81P17442 1178 aa2.56□□□□□ -2
TRA1YHR099W SEC15P22224 910 aa2.56□□□□□ -2
TRA1YHR099W MSM1P22438 575 aa2.56□□□□□ -2
TRA1YHR099W MSH2P25847 964 aa2.56□□□□□ -2
TRA1YHR099W YER156CP40093 338 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W VPS38Q05919 439 aa2.56□□□□□ -2
TRA1YHR099W SRL2Q12020 392 aa2.56□□□□□ -2
TRA1YHR099W MCM16Q12262 181 aa2.56□□□□□ -2
TRA1YHR099W YCF1P39109 1515 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W UGA1P17649 471 aa2.56□□□□□ -2
TRA1YHR099W UGA3P26370 528 aa2.56□□□□□ -2
TRA1YHR099W KNS1P32350 737 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W RRP1P35178 278 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W RTS2P40962 232 aa2.56□□□□□ -2
TRA1YHR099W BUD8P41698 603 aa2.56□□□□□ -2
TRA1YHR099W CUE3P53137 624 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W HEF3P53978 1044 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W DNF3Q12674 1656 aa2.56□□□□□ -2
TRA1YHR099W GRR1P24814 1151 aa2.56□□□□□ -2
TRA1YHR099W TIF3P34167 436 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W KEL2P50090 882 aa2.56□□□□□ -2
TRA1YHR099W ORC3P54790 616 aa2.56□□□□□ -2
TRA1YHR099W ILS1P09436 1072 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W HPR1P17629 752 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W CNA1P23287 553 aa2.56□□□□□ -2
TRA1YHR099W ATG19P35193 415 aa2.56□□□□□ -2
TRA1YHR099W HFM1P51979 1187 aa2.56□□□□□ -2
TRA1YHR099W RPC53P25441 422 aa2.56□□□□□ -2
TRA1YHR099W VMA5P31412 392 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W CNS1P33313 385 aa2.56□□□□□ -2
TRA1YHR099W RTC2P38279 296 aa2.56□□□□□ -2
TRA1YHR099W RRN7P40992 514 aa2.56□□□□□ -2
TRA1YHR099W DAS1P47005 663 aa2.56□□□□□ -2
TRA1YHR099W RRI2Q12348 645 aa2.56□□□□□ -2
TRA1YHR099W RKR1Q04781 1562 aa2.56□□□□□ -2
TRA1YHR099W SEC23P15303 768 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W BUD5P25300 642 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W TEF4P36008 412 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W NMD5P46970 1048 aa2.56□□□□□ -2
TRA1YHR099W MNP1P53163 194 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W NSE3Q05541 303 aa2.56□□□□□ -2
TRA1YHR099W CUE5Q08412 411 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W RVB2Q12464 471 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W SWI5P08153 709 aa2.56□□□□□ -2
TRA1YHR099W WHI2P12611 486 aa2.56□□□□□ -2
TRA1YHR099W PRD1P25375 712 aa2.56□□□□□ -2
TRA1YHR099W HEK2P38199 381 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
TRA1YHR099W SCC4P40090 624 aa2.56□□□□□ -2
TRA1YHR099W CEP3P40969 608 aa2.56□□□□□ -2
TRA1YHR099W GPP1P41277 250 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W UBP6P43593 499 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W YAP1802P53309 568 aa2.56□□□□□ -2
TRA1YHR099W HAS1Q03532 505 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W POB3Q04636 552 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W RIM20Q12033 661 aa2.56□□□□□ -2
TRA1YHR099W SGT2Q12118 346 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W NBP2Q12163 236 aa2.56□□□□□ -2
TRA1YHR099W YOR304C-AO14468 76 aa2.56□□□□□ -2
TRA1YHR099W PES4P39684 611 aa2.56□□□□□ -2
TRA1YHR099W SLX8P40072 274 aa2.56□□□□□ -2
TRA1YHR099W LOH1P47055 219 aa2.56□□□□□ -2
TRA1YHR099W YGR237CP50089 785 aa2.56□□□□□ -2
TRA1YHR099W NSA1P53136 463 aaPredicted RBP2.56□□□□□ -2
TRA1YHR099W TBF1Q02457 562 aa2.56□□□□□ -2
TRA1YHR099W INA17Q02888 182 aa2.56□□□□□ -2
TRA1YHR099W AAD16Q02895 342 aa2.56□□□□□ -2
TRA1YHR099W PRP42Q03776 544 aaKnown RBP2.56□□□□□ -2
TRA1YHR099W ENT4Q07872 247 aa2.56□□□□□ -2
TRA1YHR099W TAF10Q12030 206 aa2.56□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 85.4 ms