RNA–Protein interactions for RNA: YHR099W

TRA1, Transcript of Subunit of SAGA and NuA4 histone acetyltransferase complexes, yeast

Gene TRA1, Length 11,235 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRA1	YHR099W	RQC2	Q12532	1038 aa	Known RBP	3.73	□□□□□ -1.81
TRA1	YHR099W	MTC1	P47018	478 aa	Known RBP	3.64	□□□□□ -1.83
TRA1	YHR099W	MNN4	P36044	1178 aa		3.54	□□□□□ -1.84
TRA1	YHR099W	SCT1	P32784	759 aa		3.46	□□□□□ -1.86
TRA1	YHR099W	ASF1	P32447	279 aa		3.42	□□□□□ -1.86
TRA1	YHR099W	AIM44	Q99299	758 aa		3.34	□□□□□ -1.87
TRA1	YHR099W	TFA1	P36100	482 aa		3.3	□□□□□ -1.88
TRA1	YHR099W	SKI3	P17883	1432 aa	Known RBP	3.29	□□□□□ -1.88
TRA1	YHR099W	FPR3	P38911	411 aa	Known RBP	3.28	□□□□□ -1.89
TRA1	YHR099W	RSE1	Q04693	1361 aa	Known RBP	3.26	□□□□□ -1.89
TRA1	YHR099W	DRS1	P32892	752 aa	Known RBP	3.26	□□□□□ -1.89
TRA1	YHR099W	TAF7	Q05021	590 aa		3.25	□□□□□ -1.89
TRA1	YHR099W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	3.24	□□□□□ -1.89	not detected
TRA1	YHR099W	SPA2	P23201	1466 aa	Known RBP	3.21	□□□□□ -1.9
TRA1	YHR099W	SIS2	P36024	562 aa		3.17	□□□□□ -1.9
TRA1	YHR099W	QCR6	P00127	147 aa		3.17	□□□□□ -1.9
TRA1	YHR099W	BFR2	Q06631	534 aa	Known RBP	3.17	□□□□□ -1.9
TRA1	YHR099W	POL5	P39985	1022 aa	Known RBP	3.15	□□□□□ -1.9
TRA1	YHR099W	FUN12	P39730	1002 aa	Known RBP	3.15	□□□□□ -1.91
TRA1	YHR099W	MIF2	P35201	549 aa		3.13	□□□□□ -1.91
TRA1	YHR099W	FPR4	Q06205	392 aa	Predicted RBP	3.12	□□□□□ -1.91
TRA1	YHR099W	SAS10	Q12136	610 aa	Predicted RBP	3.11	□□□□□ -1.91
TRA1	YHR099W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
TRA1	YHR099W	NAP1	P25293	417 aa	Known RBP	3.1	□□□□□ -1.91
TRA1	YHR099W	ABP1	P15891	592 aa	Known RBP	3.09	□□□□□ -1.91
TRA1	YHR099W	YTA6	P40328	754 aa		3.09	□□□□□ -1.91
TRA1	YHR099W	PSH1	Q12161	406 aa		3.09	□□□□□ -1.92
TRA1	YHR099W	TCB3	Q03640	1545 aa	Known RBP	3.08	□□□□□ -1.92
TRA1	YHR099W	CHD1	P32657	1468 aa		3.08	□□□□□ -1.92
TRA1	YHR099W	NOP7	P53261	605 aa	Known RBP	3.08	□□□□□ -1.92
TRA1	YHR099W	CAB3	P36076	571 aa		3.08	□□□□□ -1.92
TRA1	YHR099W	NMD2	P38798	1089 aa	Known RBP	3.07	□□□□□ -1.92
TRA1	YHR099W	RNA1	P11745	407 aa	Known RBP	3.07	□□□□□ -1.92
TRA1	YHR099W	INO80	P53115	1489 aa		3.06	□□□□□ -1.92
TRA1	YHR099W	RLP24	Q07915	199 aa	Known RBP	3.05	□□□□□ -1.92
TRA1	YHR099W	COG8	Q04632	607 aa		3.05	□□□□□ -1.92
TRA1	YHR099W	SPT5	P27692	1063 aa	Known RBP	3.05	□□□□□ -1.92
TRA1	YHR099W	NOP2	P40991	618 aa	Known RBP	3.04	□□□□□ -1.92
TRA1	YHR099W	HSP82	P02829	709 aa	Known RBP	3.04	□□□□□ -1.92
TRA1	YHR099W	EAF7	P53911	425 aa	Known RBP	3.03	□□□□□ -1.92
TRA1	YHR099W	SYH1	Q02875	849 aa	Known RBP	3.03	□□□□□ -1.92
TRA1	YHR099W	ENP1	P38333	483 aa	Known RBP	3.03	□□□□□ -1.92
TRA1	YHR099W	RIX1	P38883	763 aa	Predicted RBP	3.03	□□□□□ -1.92
TRA1	YHR099W	RTT106	P40161	455 aa		3.03	□□□□□ -1.92
TRA1	YHR099W	ARP5	P53946	755 aa		3.03	□□□□□ -1.92
TRA1	YHR099W	NST1	P53935	1240 aa		3.02	□□□□□ -1.93
TRA1	YHR099W	NOP58	Q12499	511 aa	Known RBP	3.02	□□□□□ -1.93
TRA1	YHR099W	JJJ1	P53863	590 aa		3	□□□□□ -1.93
TRA1	YHR099W	RIM101	P33400	625 aa		3	□□□□□ -1.93
TRA1	YHR099W	DEF1	P35732	738 aa	Known RBP	3	□□□□□ -1.93
TRA1	YHR099W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
TRA1	YHR099W	MFT1	P33441	392 aa	Known RBP	3	□□□□□ -1.93
TRA1	YHR099W	BTN2	P53286	410 aa		3	□□□□□ -1.93
TRA1	YHR099W	LEO1	P38439	464 aa		3	□□□□□ -1.93
TRA1	YHR099W	YRB30	P53107	440 aa	Predicted RBP	3	□□□□□ -1.93
TRA1	YHR099W	RPC31	P17890	251 aa		2.99	□□□□□ -1.93
TRA1	YHR099W	GLE1	Q12315	538 aa		2.99	□□□□□ -1.93
TRA1	YHR099W	LEU3	P08638	886 aa		2.99	□□□□□ -1.93
TRA1	YHR099W	MPP10	P47083	593 aa	Known RBP	2.99	□□□□□ -1.93
TRA1	YHR099W	RAD26	P40352	1085 aa		2.99	□□□□□ -1.93
TRA1	YHR099W	YFR016C	P43597	1233 aa	Known RBP	2.98	□□□□□ -1.93
TRA1	YHR099W	PLP2	Q12017	286 aa		2.98	□□□□□ -1.93
TRA1	YHR099W	ORC1	P54784	914 aa	Predicted RBP	2.98	□□□□□ -1.93
TRA1	YHR099W	EBP2	P36049	427 aa	Known RBP	2.97	□□□□□ -1.93
TRA1	YHR099W	PAF1	P38351	445 aa		2.97	□□□□□ -1.93
TRA1	YHR099W	RLF2	Q12495	606 aa		2.96	□□□□□ -1.94
TRA1	YHR099W	SPB4	P25808	606 aa	Predicted RBP	2.96	□□□□□ -1.94
TRA1	YHR099W	NMD3	P38861	518 aa	Known RBP	2.96	□□□□□ -1.94
TRA1	YHR099W	YPR148C	Q06523	435 aa		2.96	□□□□□ -1.94
TRA1	YHR099W	IRC20	Q06554	1556 aa		2.96	□□□□□ -1.94
TRA1	YHR099W	SNF7	P39929	240 aa	Known RBP	2.95	□□□□□ -1.94
TRA1	YHR099W	YTA7	P40340	1379 aa		2.95	□□□□□ -1.94
TRA1	YHR099W	RPP2A	P05319	106 aa	Known RBP	2.95	□□□□□ -1.94
TRA1	YHR099W	RNR4	P49723	345 aa	Known RBP	2.95	□□□□□ -1.94
TRA1	YHR099W	CDC11	P32458	415 aa		2.94	□□□□□ -1.94
TRA1	YHR099W	CLB3	P24870	427 aa		2.94	□□□□□ -1.94
TRA1	YHR099W	HSC82	P15108	705 aa	Known RBP	2.94	□□□□□ -1.94
TRA1	YHR099W	NOG1	Q02892	647 aa	Known RBP	2.94	□□□□□ -1.94
TRA1	YHR099W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	2.94	□□□□□ -1.94	not detected
TRA1	YHR099W	TPM1	P17536	199 aa	Known RBP	2.93	□□□□□ -1.94
TRA1	YHR099W	ESC2	Q06340	456 aa		2.93	□□□□□ -1.94
TRA1	YHR099W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	2.93	□□□□□ -1.94	not detected
TRA1	YHR099W	PRI1	P10363	409 aa		2.93	□□□□□ -1.94
TRA1	YHR099W	PUP2	P32379	260 aa		2.93	□□□□□ -1.94
TRA1	YHR099W	SMC1	P32908	1225 aa		2.93	□□□□□ -1.94
TRA1	YHR099W	URN1	Q06525	465 aa	Known RBP	2.92	□□□□□ -1.94
TRA1	YHR099W	RED1	P14291	827 aa		2.92	□□□□□ -1.94
TRA1	YHR099W	YFR006W	P43590	535 aa		2.92	□□□□□ -1.94
TRA1	YHR099W	KRI1	P42846	591 aa	Known RBP	2.91	□□□□□ -1.94
TRA1	YHR099W	JIP3	O13555	125 aa		2.91	□□□□□ -1.94
TRA1	YHR099W	HOS4	P40480	1083 aa		2.91	□□□□□ -1.94
TRA1	YHR099W	TSR2	Q06672	205 aa	Known RBP	2.91	□□□□□ -1.94
TRA1	YHR099W	ATG3	P40344	310 aa		2.91	□□□□□ -1.94
TRA1	YHR099W	ETP1	P38748	585 aa	Known RBP	2.91	□□□□□ -1.94
TRA1	YHR099W	SEC3	P33332	1336 aa	Known RBP	2.91	□□□□□ -1.94
TRA1	YHR099W	CLB5	P30283	435 aa		2.91	□□□□□ -1.94
TRA1	YHR099W	SPT21	P35209	758 aa		2.91	□□□□□ -1.94
TRA1	YHR099W	SMY2	P32909	740 aa	Known RBP	2.9	□□□□□ -1.94
TRA1	YHR099W	TSR1	Q07381	788 aa	Known RBP	2.9	□□□□□ -1.94
TRA1	YHR099W	RPP2B	P02400	110 aa	Known RBP	2.9	□□□□□ -1.95

Retrieved 100 of 5,963 RNA–protein pairs in 16.3 ms