RNA–Protein interactions for RNA: YER049W

TPA1, Transcript of Poly(rA)-binding protein, yeast

Gene TPA1, Length 1,935 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TPA1	YER049W	CDC19	P00549	500 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	RPL22A	P05749	121 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	RGP1	P16664	663 aa		4.64	□□□□□ -1.67
TPA1	YER049W	RPS26A	P39938	119 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	RPS26B	P39939	119 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	UBP15	P50101	1230 aa		4.64	□□□□□ -1.67
TPA1	YER049W	YGL082W	P53155	381 aa		4.64	□□□□□ -1.67
TPA1	YER049W	JIP5	Q06214	492 aa	Predicted RBP	4.64	□□□□□ -1.67
TPA1	YER049W	MSH1	P25846	959 aa		4.64	□□□□□ -1.67
TPA1	YER049W	APL2	P36000	726 aa	Predicted RBP	4.64	□□□□□ -1.67
TPA1	YER049W	PXL1	P36166	706 aa		4.64	□□□□□ -1.67
TPA1	YER049W	FAA3	P39002	694 aa		4.64	□□□□□ -1.67
TPA1	YER049W	BUD6	P41697	788 aa		4.64	□□□□□ -1.67
TPA1	YER049W	EMG1	Q06287	252 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	MAG2	Q06436	670 aa	Known RBP	4.64	□□□□□ -1.67
TPA1	YER049W	LAM4	P38800	1345 aa		4.63	□□□□□ -1.67
TPA1	YER049W	COB	P00163	385 aa		4.63	□□□□□ -1.67
TPA1	YER049W	SUP35	P05453	685 aa	Known RBP	4.63	□□□□□ -1.67
TPA1	YER049W	PSY4	P38193	441 aa		4.63	□□□□□ -1.67
TPA1	YER049W	SAC3	P46674	1301 aa		4.63	□□□□□ -1.67
TPA1	YER049W	HXK1	P04806	485 aa	Known RBP	4.62	□□□□□ -1.67
TPA1	YER049W	SEC18	P18759	758 aa	Known RBP	4.62	□□□□□ -1.67
TPA1	YER049W	CBP3	P21560	335 aa		4.62	□□□□□ -1.67
TPA1	YER049W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
TPA1	YER049W	YBP2	P53169	641 aa		4.62	□□□□□ -1.67
TPA1	YER049W	VPS75	P53853	264 aa		4.62	□□□□□ -1.67
TPA1	YER049W	FAR11	P53917	953 aa		4.62	□□□□□ -1.67
TPA1	YER049W	MRS2	Q01926	470 aa		4.62	□□□□□ -1.67
TPA1	YER049W	YCG1	Q06680	1035 aa		4.62	□□□□□ -1.67
TPA1	YER049W	FLP1	P03870	423 aa		4.62	□□□□□ -1.67
TPA1	YER049W	PHO13	P19881	312 aa		4.62	□□□□□ -1.67
TPA1	YER049W	MCM4	P30665	933 aa	Known RBP	4.62	□□□□□ -1.67
TPA1	YER049W	AIM46	P38885	310 aa		4.62	□□□□□ -1.67
TPA1	YER049W	BRE2	P43132	505 aa		4.62	□□□□□ -1.67
TPA1	YER049W	PRP31	P49704	494 aa	Predicted RBP	4.62	□□□□□ -1.67
TPA1	YER049W	YNR040W	P53736	256 aa		4.62	□□□□□ -1.67
TPA1	YER049W	UBP16	Q02863	499 aa		4.62	□□□□□ -1.67
TPA1	YER049W	VMS1	Q04311	632 aa	Known RBP	4.62	□□□□□ -1.67
TPA1	YER049W	SML1	Q04964	104 aa		4.62	□□□□□ -1.67
TPA1	YER049W	RPN7	Q06103	429 aa	Known RBP	4.62	□□□□□ -1.67
TPA1	YER049W	OPT2	Q06593	877 aa		4.62	□□□□□ -1.67
TPA1	YER049W	CTI6	Q08923	506 aa		4.62	□□□□□ -1.67
TPA1	YER049W	PHM7	Q12252	991 aa		4.62	□□□□□ -1.67
TPA1	YER049W	DEP1	P31385	405 aa		4.61	□□□□□ -1.67
TPA1	YER049W	RRP1	P35178	278 aa	Predicted RBP	4.61	□□□□□ -1.67
TPA1	YER049W	YHL008C	P38750	627 aa		4.61	□□□□□ -1.67
TPA1	YER049W	NOC2	P39744	710 aa	Known RBP	4.61	□□□□□ -1.67
TPA1	YER049W	YIL165C	P40446	119 aa		4.61	□□□□□ -1.67
TPA1	YER049W	YNL193W	P53870	558 aa		4.61	□□□□□ -1.67
TPA1	YER049W	ALF1	P53904	254 aa		4.61	□□□□□ -1.67
TPA1	YER049W	FCP1	Q03254	732 aa		4.61	□□□□□ -1.67
TPA1	YER049W	DAL4	Q04895	635 aa		4.61	□□□□□ -1.67
TPA1	YER049W	OXR1	Q08952	273 aa		4.61	□□□□□ -1.67
TPA1	YER049W	APL4	Q12028	832 aa		4.61	□□□□□ -1.67
TPA1	YER049W	SSF2	Q12153	453 aa	Predicted RBP	4.61	□□□□□ -1.67
TPA1	YER049W	YKL068W-A	Q3E826	78 aa		4.61	□□□□□ -1.67
TPA1	YER049W	YOL087C	Q99247	1116 aa		4.61	□□□□□ -1.67
TPA1	YER049W	ADR1	P07248	1323 aa		4.61	□□□□□ -1.67
TPA1	YER049W	UBC1	P21734	215 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	IMP2'	P32351	346 aa		4.6	□□□□□ -1.67
TPA1	YER049W	DUR3	P33413	735 aa		4.6	□□□□□ -1.67
TPA1	YER049W	PCH2	P38126	564 aa		4.6	□□□□□ -1.67
TPA1	YER049W	APM2	P38700	605 aa		4.6	□□□□□ -1.67
TPA1	YER049W	CRG1	P38892	291 aa	RIP-Chip data	4.6	□□□□□ -1.67	not detected
TPA1	YER049W	CCC2	P38995	1004 aa		4.6	□□□□□ -1.67
TPA1	YER049W	MSH4	P40965	878 aa	Predicted RBP	4.6	□□□□□ -1.67
TPA1	YER049W	CUE3	P53137	624 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	MAL13	P53338	473 aa		4.6	□□□□□ -1.67
TPA1	YER049W	UBP2	Q01476	1272 aa		4.6	□□□□□ -1.67
TPA1	YER049W	RNT1	Q02555	471 aa		4.6	□□□□□ -1.67
TPA1	YER049W	ESF1	Q06344	628 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	ATG13	Q06628	738 aa		4.6	□□□□□ -1.67
TPA1	YER049W	TMA16	Q08687	178 aa		4.6	□□□□□ -1.67
TPA1	YER049W	PET123	P17558	318 aa		4.6	□□□□□ -1.67
TPA1	YER049W	CLB1	P24868	471 aa		4.6	□□□□□ -1.67
TPA1	YER049W	DPB3	P27344	201 aa		4.6	□□□□□ -1.67
TPA1	YER049W	CDC15	P27636	974 aa		4.6	□□□□□ -1.67
TPA1	YER049W	PYC2	P32327	1180 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	UGA4	P32837	571 aa		4.6	□□□□□ -1.67
TPA1	YER049W	PRP40	P33203	583 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	MRPL16	P38064	232 aa		4.6	□□□□□ -1.67
TPA1	YER049W	OCA5	P38738	679 aa		4.6	□□□□□ -1.67
TPA1	YER049W	ALD3	P54114	506 aa		4.6	□□□□□ -1.67
TPA1	YER049W	NAM8	Q00539	523 aa	Known RBP	4.6	□□□□□ -1.67
TPA1	YER049W	VPS16	Q03308	798 aa		4.6	□□□□□ -1.67
TPA1	YER049W	PKH1	Q03407	766 aa		4.6	□□□□□ -1.67
TPA1	YER049W	DCS2	Q12123	353 aa		4.6	□□□□□ -1.67
TPA1	YER049W	TAH18	Q12181	623 aa		4.6	□□□□□ -1.67
TPA1	YER049W	GIN4	Q12263	1142 aa		4.6	□□□□□ -1.67
TPA1	YER049W	SNU66	Q12420	587 aa	Predicted RBP	4.6	□□□□□ -1.67
TPA1	YER049W	PEP7	P32609	515 aa		4.59	□□□□□ -1.67
TPA1	YER049W	OSH7	P38755	437 aa		4.59	□□□□□ -1.67
TPA1	YER049W	VPS41	P38959	992 aa		4.59	□□□□□ -1.67
TPA1	YER049W	EPL1	P43572	832 aa		4.59	□□□□□ -1.67
TPA1	YER049W	MSH6	Q03834	1242 aa		4.59	□□□□□ -1.67
TPA1	YER049W	YCS4	Q06156	1176 aa		4.59	□□□□□ -1.67
TPA1	YER049W	SPN1	Q06505	410 aa	Predicted RBP	4.59	□□□□□ -1.67
TPA1	YER049W	TLG2	Q08144	397 aa		4.59	□□□□□ -1.67
TPA1	YER049W	TY1A-BL	Q12266	440 aa		4.59	□□□□□ -1.67
TPA1	YER049W	HSP82	P02829	709 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms