Protein–RNA interactions for Protein: P38959

VPS41, Vacuolar protein sorting-associated protein 41, yeastyeast

Predictions only

Length 992 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS41P38959 NSR1YGR159C 1245 nt20.49■□□□□ 0.87
VPS41P38959 YML009W-BYML009W-B 477 nt19.92■□□□□ 0.78
VPS41P38959 MDJ1YFL016C 1536 nt19■□□□□ 0.63
VPS41P38959 NOP1YDL014W 984 nt19■□□□□ 0.63
VPS41P38959 YJL027CYJL027C 417 nt17.41■□□□□ 0.38
VPS41P38959 YKL036CYKL036C 393 nt17.06■□□□□ 0.32
VPS41P38959 SRX1YKL086W 384 nt16.63■□□□□ 0.25
VPS41P38959 DBP2YNL112W 1641 nt16.52■□□□□ 0.23
VPS41P38959 SSA3YBL075C 1950 nt16.51■□□□□ 0.23
VPS41P38959 Q0297Q0297 156 nt16.41■□□□□ 0.22
VPS41P38959 YBR190WYBR190W 312 nt16.38■□□□□ 0.21
VPS41P38959 RTC3YHR087W 336 nt15.95■□□□□ 0.14
VPS41P38959 YCR051WYCR051W 669 nt15.71■□□□□ 0.11
VPS41P38959 TRN1tP(UGG)A 72 nt15.54■□□□□ 0.08
VPS41P38959 SUF9tP(UGG)F 72 nt15.54■□□□□ 0.08
VPS41P38959 SUF8tP(UGG)H 72 nt15.54■□□□□ 0.08
VPS41P38959 tP(UGG)LtP(UGG)L 72 nt15.54■□□□□ 0.08
VPS41P38959 SUF7tP(UGG)M 72 nt15.54■□□□□ 0.08
VPS41P38959 tP(UGG)N1tP(UGG)N1 72 nt15.54■□□□□ 0.08
VPS41P38959 tP(UGG)N2tP(UGG)N2 72 nt15.54■□□□□ 0.08
VPS41P38959 tP(UGG)O1tP(UGG)O1 72 nt15.54■□□□□ 0.08
VPS41P38959 SUF11tP(UGG)O2 72 nt15.54■□□□□ 0.08
VPS41P38959 PUT4YOR348C 1884 nt15.53■□□□□ 0.08
VPS41P38959 SCS3YGL126W 1143 nt15.39■□□□□ 0.05
VPS41P38959 CCC1YLR220W 969 nt15.36■□□□□ 0.05
VPS41P38959 RVS167YDR388W 1449 nt15.23■□□□□ 0.03
VPS41P38959 SCJ1YMR214W 1134 nt15.09■□□□□ 0.01
VPS41P38959 ARE1YCR048W 1833 nt15□□□□□ -0.01
VPS41P38959 POA1YBR022W 534 nt14.97□□□□□ -0.01
VPS41P38959 BSC6YOL137W 1494 nt14.8□□□□□ -0.04
VPS41P38959 YHR049C-AYHR049C-A 297 nt14.79□□□□□ -0.04
VPS41P38959 YOL085CYOL085C 342 nt14.79□□□□□ -0.04
VPS41P38959 SPT5YML010W 3192 nt14.78□□□□□ -0.04
VPS41P38959 SAH1YER043C 1350 nt14.75□□□□□ -0.05
VPS41P38959 RPP1BYDL130W 321 nt14.72□□□□□ -0.05
VPS41P38959 URN1YPR152C 1398 nt14.66□□□□□ -0.06
VPS41P38959 OPI9YLR338W 858 nt14.62□□□□□ -0.07
VPS41P38959 SSA4YER103W 1929 nt14.62□□□□□ -0.07
VPS41P38959 PKP1YIL042C 1185 nt14.6□□□□□ -0.07
VPS41P38959 SHR5YOL110W 714 nt14.55□□□□□ -0.08
VPS41P38959 DEP1YAL013W 1218 nt14.44□□□□□ -0.1
VPS41P38959 tP(UGG)O3tP(UGG)O3 72 nt14.43□□□□□ -0.1
VPS41P38959 BUD23YCR047C 828 nt14.36□□□□□ -0.11
VPS41P38959 PET122YER153C 765 nt14.19□□□□□ -0.14
VPS41P38959 RPN10YHR200W 807 nt14.19□□□□□ -0.14
VPS41P38959 BDF1YLR399C 2061 nt14.16□□□□□ -0.14
VPS41P38959 PTC2YER089C 1395 nt14.15□□□□□ -0.14
VPS41P38959 PUN1YLR414C 792 nt14.15□□□□□ -0.14
VPS41P38959 YNL208WYNL208W 600 nt14.09□□□□□ -0.15
VPS41P38959 NAB2YGL122C 1578 nt14.05□□□□□ -0.16
VPS41P38959 MEP2YNL142W 1500 nt13.98□□□□□ -0.17
VPS41P38959 YDJ1YNL064C 1230 nt13.96□□□□□ -0.17
VPS41P38959 TAT1YBR069C 1860 nt13.94□□□□□ -0.18
VPS41P38959 YJR018WYJR018W 363 nt13.93□□□□□ -0.18
VPS41P38959 FIS1YIL065C 468 nt13.82□□□□□ -0.2
VPS41P38959 SCR1SCR1 522 nt13.81□□□□□ -0.2
VPS41P38959 GAR1YHR089C 618 nt13.78□□□□□ -0.2
VPS41P38959 DCW1YKL046C 1350 nt13.77□□□□□ -0.21
VPS41P38959 DAL1YIR027C 1383 nt13.72□□□□□ -0.21
VPS41P38959 RRN5YLR141W 1092 nt13.7□□□□□ -0.22
VPS41P38959 ATS1YAL020C 1002 nt13.69□□□□□ -0.22
VPS41P38959 PAC11YDR488C 1602 nt13.66□□□□□ -0.22
VPS41P38959 FPR4YLR449W 1179 nt13.66□□□□□ -0.22
VPS41P38959 YPS1YLR120C 1710 nt13.64□□□□□ -0.23
VPS41P38959 YJR120WYJR120W 351 nt13.63□□□□□ -0.23
VPS41P38959 PHO4YFR034C 939 nt13.61□□□□□ -0.23
VPS41P38959 YBR220CYBR220C 1683 nt13.58□□□□□ -0.24
VPS41P38959 EMI2YDR516C 1503 nt13.54□□□□□ -0.24
VPS41P38959 INM2YDR287W 879 nt13.51□□□□□ -0.25
VPS41P38959 YHR165W-AYHR165W-A 312 nt13.51□□□□□ -0.25
VPS41P38959 YMR090WYMR090W 684 nt13.44□□□□□ -0.26
VPS41P38959 YDR095CYDR095C 411 nt13.43□□□□□ -0.26
VPS41P38959 YER088W-BYER088W-B 147 nt13.42□□□□□ -0.26
VPS41P38959 SSA1YAL005C 1929 nt13.39□□□□□ -0.27
VPS41P38959 RPP2BYDR382W 333 nt13.38□□□□□ -0.27
VPS41P38959 YDL221WYDL221W 552 nt13.36□□□□□ -0.27
VPS41P38959 SDH1YKL148C 1923 nt13.36□□□□□ -0.27
VPS41P38959 TIR1YER011W 765 nt13.35□□□□□ -0.27
VPS41P38959 CAC2YML102W 1407 nt13.3□□□□□ -0.28
VPS41P38959 YBL100CYBL100C 315 nt13.27□□□□□ -0.29
VPS41P38959 PTP1YDL230W 1008 nt13.26□□□□□ -0.29
VPS41P38959 PCH2YBR186W 1695 nt13.26□□□□□ -0.29
VPS41P38959 NVJ2YPR091C 2313 nt13.25□□□□□ -0.29
VPS41P38959 RSB1YOR049C 1065 nt13.24□□□□□ -0.29
VPS41P38959 GUT2YIL155C 1950 nt13.23□□□□□ -0.29
VPS41P38959 SEC11YIR022W 504 nt13.16□□□□□ -0.3
VPS41P38959 RPP2AYOL039W 321 nt13.16□□□□□ -0.3
VPS41P38959 SCC4YER147C 1875 nt13.15□□□□□ -0.3
VPS41P38959 IRC15YPL017C 1500 nt13.1□□□□□ -0.31
VPS41P38959 FUN26YAL022C 1554 nt13.1□□□□□ -0.31
VPS41P38959 SRB2YHR041C 633 nt13.08□□□□□ -0.32
VPS41P38959 PIB2YGL023C 1908 nt13.05□□□□□ -0.32
VPS41P38959 ALF1YNL148C 765 nt13.04□□□□□ -0.32
VPS41P38959 BDH2YAL061W 1254 nt13.02□□□□□ -0.33
VPS41P38959 GIS3YLR094C 1509 nt13.02□□□□□ -0.33
VPS41P38959 YSC84YHR016C 1407 nt12.96□□□□□ -0.34
VPS41P38959 SIS1YNL007C 1059 nt12.91□□□□□ -0.34
VPS41P38959 TRM9YML014W 840 nt12.89□□□□□ -0.35
VPS41P38959 YHL050CYHL050C 2094 nt12.88□□□□□ -0.35
VPS41P38959 RTF1YGL244W 1677 nt12.86□□□□□ -0.35
Retrieved 100 of 7,029 protein–RNA pairs in 13.9 ms