Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
BLOC1S4Q9NUP1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
BLOC1S4Q9NUP1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.47■■■□□ 2.15
BLOC1S4Q9NUP1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
BLOC1S4Q9NUP1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
BLOC1S4Q9NUP1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
BLOC1S4Q9NUP1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
BLOC1S4Q9NUP1 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.45■■■□□ 2.15
BLOC1S4Q9NUP1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.45■■■□□ 2.14
BLOC1S4Q9NUP1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.14
BLOC1S4Q9NUP1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
BLOC1S4Q9NUP1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
BLOC1S4Q9NUP1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.43■■■□□ 2.14
BLOC1S4Q9NUP1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
BLOC1S4Q9NUP1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.42■■■□□ 2.14
BLOC1S4Q9NUP1 ZNRF2P2-203ENST00000454624 420 ntBASIC28.42■■■□□ 2.14
BLOC1S4Q9NUP1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
BLOC1S4Q9NUP1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
BLOC1S4Q9NUP1 LINC01971-201ENST00000617888 1048 ntBASIC28.41■■■□□ 2.14
BLOC1S4Q9NUP1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
BLOC1S4Q9NUP1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
BLOC1S4Q9NUP1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.41■■■□□ 2.14
BLOC1S4Q9NUP1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
BLOC1S4Q9NUP1 ABHD17AP4-201ENST00000411545 909 ntBASIC28.4■■■□□ 2.14
BLOC1S4Q9NUP1 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.4■■■□□ 2.14
BLOC1S4Q9NUP1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
BLOC1S4Q9NUP1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
BLOC1S4Q9NUP1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
BLOC1S4Q9NUP1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.38■■■□□ 2.13
BLOC1S4Q9NUP1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
BLOC1S4Q9NUP1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
BLOC1S4Q9NUP1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BLOC1S4Q9NUP1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
BLOC1S4Q9NUP1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
BLOC1S4Q9NUP1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
BLOC1S4Q9NUP1 AC110285.7-201ENST00000624417 1536 ntBASIC28.36■■■□□ 2.13
BLOC1S4Q9NUP1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.35■■■□□ 2.13
BLOC1S4Q9NUP1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.35■■■□□ 2.13
BLOC1S4Q9NUP1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.35■■■□□ 2.13
BLOC1S4Q9NUP1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
BLOC1S4Q9NUP1 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
BLOC1S4Q9NUP1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
BLOC1S4Q9NUP1 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.32■■■□□ 2.12
BLOC1S4Q9NUP1 LINC01003-201ENST00000564834 1764 ntBASIC28.32■■■□□ 2.12
BLOC1S4Q9NUP1 BX255925.1-201ENST00000566954 1854 ntBASIC28.32■■■□□ 2.12
BLOC1S4Q9NUP1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L11-201ENST00000611504 1267 ntBASIC28.3■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L12-201ENST00000614593 1267 ntBASIC28.3■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L14-201ENST00000621227 1267 ntBASIC28.3■■■□□ 2.12
BLOC1S4Q9NUP1 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
BLOC1S4Q9NUP1 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BLOC1S4Q9NUP1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BLOC1S4Q9NUP1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
BLOC1S4Q9NUP1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 AC018358.1-201ENST00000631079 1402 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L13-201ENST00000554103 1267 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L15-201ENST00000611059 1267 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L23-201ENST00000615195 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L24-201ENST00000617576 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L22-201ENST00000618238 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L20-201ENST00000619712 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L21-201ENST00000622058 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L10-201ENST00000622460 1267 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 DUX4L25-201ENST00000624915 1269 ntBASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.28■■■□□ 2.12
BLOC1S4Q9NUP1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.27■■■□□ 2.12
BLOC1S4Q9NUP1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
BLOC1S4Q9NUP1 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
BLOC1S4Q9NUP1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
BLOC1S4Q9NUP1 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
BLOC1S4Q9NUP1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BLOC1S4Q9NUP1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BLOC1S4Q9NUP1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BLOC1S4Q9NUP1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
BLOC1S4Q9NUP1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.23■■■□□ 2.11
BLOC1S4Q9NUP1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.23■■■□□ 2.11
BLOC1S4Q9NUP1 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.23■■■□□ 2.11
BLOC1S4Q9NUP1 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
BLOC1S4Q9NUP1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BLOC1S4Q9NUP1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.22■■■□□ 2.11
BLOC1S4Q9NUP1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BLOC1S4Q9NUP1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BLOC1S4Q9NUP1 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
BLOC1S4Q9NUP1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.21■■■□□ 2.11
BLOC1S4Q9NUP1 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
BLOC1S4Q9NUP1 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms