Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.52■■■□□ 2
KRT39Q6A163 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC27.52■■■□□ 2
KRT39Q6A163 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC27.52■■■□□ 2
KRT39Q6A163 LINC01971-201ENST00000617888 1048 ntBASIC27.52■■■□□ 2
KRT39Q6A163 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC27.52■■■□□ 2
KRT39Q6A163 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
KRT39Q6A163 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
KRT39Q6A163 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
KRT39Q6A163 ZNRF2P2-203ENST00000454624 420 ntBASIC27.5■■□□□ 1.99
KRT39Q6A163 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.5■■□□□ 1.99
KRT39Q6A163 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
KRT39Q6A163 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
KRT39Q6A163 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
KRT39Q6A163 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC27.49■■□□□ 1.99
KRT39Q6A163 ABHD17AP4-201ENST00000411545 909 ntBASIC27.48■■□□□ 1.99
KRT39Q6A163 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC27.48■■□□□ 1.99
KRT39Q6A163 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
KRT39Q6A163 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
KRT39Q6A163 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC27.47■■□□□ 1.99
KRT39Q6A163 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC27.47■■□□□ 1.99
KRT39Q6A163 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
KRT39Q6A163 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
KRT39Q6A163 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
KRT39Q6A163 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC27.46■■□□□ 1.99
KRT39Q6A163 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC27.45■■□□□ 1.99
KRT39Q6A163 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
KRT39Q6A163 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
KRT39Q6A163 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
KRT39Q6A163 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC27.44■■□□□ 1.98
KRT39Q6A163 AC110285.7-201ENST00000624417 1536 ntBASIC27.44■■□□□ 1.98
KRT39Q6A163 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
KRT39Q6A163 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
KRT39Q6A163 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
KRT39Q6A163 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
KRT39Q6A163 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
KRT39Q6A163 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC27.42■■□□□ 1.98
KRT39Q6A163 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
KRT39Q6A163 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
KRT39Q6A163 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
KRT39Q6A163 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
KRT39Q6A163 CHML-204ENST00000638121 920 ntTSL 2 BASIC27.41■■□□□ 1.98
KRT39Q6A163 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
KRT39Q6A163 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
KRT39Q6A163 DUX4L11-201ENST00000611504 1267 ntBASIC27.4■■□□□ 1.98
KRT39Q6A163 DUX4L12-201ENST00000614593 1267 ntBASIC27.4■■□□□ 1.98
KRT39Q6A163 DUX4L14-201ENST00000621227 1267 ntBASIC27.4■■□□□ 1.98
KRT39Q6A163 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
KRT39Q6A163 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC27.39■■□□□ 1.98
KRT39Q6A163 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC27.38■■□□□ 1.97
KRT39Q6A163 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L13-201ENST00000554103 1267 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L15-201ENST00000611059 1267 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L23-201ENST00000615195 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L24-201ENST00000617576 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L22-201ENST00000618238 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L20-201ENST00000619712 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L21-201ENST00000622058 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L10-201ENST00000622460 1267 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 DUX4L25-201ENST00000624915 1269 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
KRT39Q6A163 BX255925.1-201ENST00000566954 1854 ntBASIC27.38■■□□□ 1.97
KRT39Q6A163 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
KRT39Q6A163 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
KRT39Q6A163 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC27.37■■□□□ 1.97
KRT39Q6A163 LINC01003-201ENST00000564834 1764 ntBASIC27.37■■□□□ 1.97
KRT39Q6A163 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
KRT39Q6A163 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
KRT39Q6A163 PEX7-203ENST00000541292 945 ntTSL 5 BASIC27.36■■□□□ 1.97
KRT39Q6A163 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
KRT39Q6A163 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC27.35■■□□□ 1.97
KRT39Q6A163 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
KRT39Q6A163 AC018358.1-201ENST00000631079 1402 ntBASIC27.34■■□□□ 1.97
KRT39Q6A163 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC27.34■■□□□ 1.97
KRT39Q6A163 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
KRT39Q6A163 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
KRT39Q6A163 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC27.34■■□□□ 1.97
KRT39Q6A163 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT39Q6A163 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
KRT39Q6A163 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
KRT39Q6A163 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
KRT39Q6A163 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
KRT39Q6A163 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
KRT39Q6A163 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC27.32■■□□□ 1.96
KRT39Q6A163 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
KRT39Q6A163 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
KRT39Q6A163 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT39Q6A163 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT39Q6A163 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
KRT39Q6A163 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC27.31■■□□□ 1.96
KRT39Q6A163 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
KRT39Q6A163 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
KRT39Q6A163 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
KRT39Q6A163 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT39Q6A163 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT39Q6A163 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
KRT39Q6A163 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
KRT39Q6A163 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC27.28■■□□□ 1.96
KRT39Q6A163 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.28■■□□□ 1.96
KRT39Q6A163 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
KRT39Q6A163 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms