Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CKS1BP61024 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 AL139393.2-201ENST00000608721 2025 ntBASIC17.43■□□□□ 0.38
CKS1BP61024 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CKS1BP61024 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CKS1BP61024 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CKS1BP61024 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC17.42■□□□□ 0.38
CKS1BP61024 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CKS1BP61024 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CKS1BP61024 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC17.41■□□□□ 0.38
CKS1BP61024 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC17.41■□□□□ 0.38
CKS1BP61024 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CKS1BP61024 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC17.41■□□□□ 0.38
CKS1BP61024 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC17.4■□□□□ 0.38
CKS1BP61024 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CKS1BP61024 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC17.38■□□□□ 0.37
CKS1BP61024 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 KLF16-203ENST00000592313 508 ntTSL 3 BASIC17.38■□□□□ 0.37
CKS1BP61024 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.37■□□□□ 0.37
CKS1BP61024 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.36■□□□□ 0.37
CKS1BP61024 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC17.35■□□□□ 0.37
CKS1BP61024 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CKS1BP61024 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CKS1BP61024 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CKS1BP61024 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CKS1BP61024 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CKS1BP61024 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CKS1BP61024 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC17.33■□□□□ 0.37
CKS1BP61024 DRD5P2-201ENST00000421395 2012 ntBASIC17.33■□□□□ 0.37
CKS1BP61024 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
CKS1BP61024 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CKS1BP61024 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CKS1BP61024 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.33■□□□□ 0.36
CKS1BP61024 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.33■□□□□ 0.36
CKS1BP61024 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CKS1BP61024 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CKS1BP61024 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC17.32■□□□□ 0.36
CKS1BP61024 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CKS1BP61024 LINC00543-201ENST00000567234 1845 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.31■□□□□ 0.36
CKS1BP61024 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CKS1BP61024 AL133380.1-201ENST00000506013 324 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CKS1BP61024 AC010864.1-201ENST00000609407 1511 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CKS1BP61024 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC17.3■□□□□ 0.36
CKS1BP61024 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC17.29■□□□□ 0.36
CKS1BP61024 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CKS1BP61024 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CKS1BP61024 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC17.29■□□□□ 0.36
CKS1BP61024 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CKS1BP61024 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CKS1BP61024 CLDN5-201ENST00000403084 2357 ntBASIC17.28■□□□□ 0.36
CKS1BP61024 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
CKS1BP61024 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CKS1BP61024 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CKS1BP61024 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC17.27■□□□□ 0.35
CKS1BP61024 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CKS1BP61024 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CKS1BP61024 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CKS1BP61024 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC17.26■□□□□ 0.35
CKS1BP61024 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms