Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CKS1BP61024 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CKS1BP61024 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 AL139393.2-201ENST00000608721 2025 ntBASIC17.43■□□□□ 0.38
CKS1BP61024 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CKS1BP61024 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CKS1BP61024 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CKS1BP61024 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CKS1BP61024 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC17.42■□□□□ 0.38
CKS1BP61024 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CKS1BP61024 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
CKS1BP61024 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC17.41■□□□□ 0.38
CKS1BP61024 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC17.41■□□□□ 0.38
CKS1BP61024 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CKS1BP61024 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC17.41■□□□□ 0.38
CKS1BP61024 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CKS1BP61024 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC17.4■□□□□ 0.38
CKS1BP61024 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CKS1BP61024 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CKS1BP61024 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
CKS1BP61024 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC17.38■□□□□ 0.37
CKS1BP61024 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 KLF16-203ENST00000592313 508 ntTSL 3 BASIC17.38■□□□□ 0.37
CKS1BP61024 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CKS1BP61024 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CKS1BP61024 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.37■□□□□ 0.37
CKS1BP61024 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.36■□□□□ 0.37
CKS1BP61024 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CKS1BP61024 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC17.35■□□□□ 0.37
CKS1BP61024 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
CKS1BP61024 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CKS1BP61024 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CKS1BP61024 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
CKS1BP61024 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CKS1BP61024 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CKS1BP61024 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CKS1BP61024 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC17.33■□□□□ 0.37
CKS1BP61024 DRD5P2-201ENST00000421395 2012 ntBASIC17.33■□□□□ 0.37
CKS1BP61024 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
CKS1BP61024 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CKS1BP61024 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CKS1BP61024 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.33■□□□□ 0.36
CKS1BP61024 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CKS1BP61024 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC17.33■□□□□ 0.36
CKS1BP61024 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
CKS1BP61024 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CKS1BP61024 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC17.32■□□□□ 0.36
CKS1BP61024 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CKS1BP61024 LINC00543-201ENST00000567234 1845 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC17.31■□□□□ 0.36
CKS1BP61024 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CKS1BP61024 AL133380.1-201ENST00000506013 324 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CKS1BP61024 AC010864.1-201ENST00000609407 1511 ntBASIC17.31■□□□□ 0.36
CKS1BP61024 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CKS1BP61024 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC17.3■□□□□ 0.36
CKS1BP61024 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC17.29■□□□□ 0.36
CKS1BP61024 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CKS1BP61024 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CKS1BP61024 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC17.29■□□□□ 0.36
CKS1BP61024 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CKS1BP61024 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CKS1BP61024 CLDN5-201ENST00000403084 2357 ntBASIC17.28■□□□□ 0.36
CKS1BP61024 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
CKS1BP61024 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CKS1BP61024 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CKS1BP61024 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC17.27■□□□□ 0.35
CKS1BP61024 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CKS1BP61024 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CKS1BP61024 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CKS1BP61024 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC17.26■□□□□ 0.35
CKS1BP61024 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms