Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
FOXA3P55318 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
FOXA3P55318 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
FOXA3P55318 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
FOXA3P55318 ZNRF2P1-201ENST00000441407 443 ntBASIC18.92■□□□□ 0.62
FOXA3P55318 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA3P55318 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
FOXA3P55318 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA3P55318 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC18.92■□□□□ 0.62
FOXA3P55318 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC18.92■□□□□ 0.62
FOXA3P55318 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA3P55318 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
FOXA3P55318 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
FOXA3P55318 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC18.91■□□□□ 0.62
FOXA3P55318 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC18.91■□□□□ 0.62
FOXA3P55318 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA3P55318 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA3P55318 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
FOXA3P55318 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
FOXA3P55318 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
FOXA3P55318 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA3P55318 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA3P55318 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA3P55318 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
FOXA3P55318 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
FOXA3P55318 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA3P55318 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA3P55318 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC18.88■□□□□ 0.61
FOXA3P55318 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
FOXA3P55318 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA3P55318 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA3P55318 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
FOXA3P55318 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA3P55318 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA3P55318 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.86■□□□□ 0.61
FOXA3P55318 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA3P55318 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
FOXA3P55318 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA3P55318 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC18.86■□□□□ 0.61
FOXA3P55318 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA3P55318 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA3P55318 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA3P55318 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA3P55318 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA3P55318 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA3P55318 AC145676.1-201ENST00000514988 2004 ntBASIC18.84■□□□□ 0.61
FOXA3P55318 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.84■□□□□ 0.61
FOXA3P55318 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA3P55318 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC18.84■□□□□ 0.61
FOXA3P55318 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
FOXA3P55318 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA3P55318 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC18.84■□□□□ 0.61
FOXA3P55318 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
FOXA3P55318 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
FOXA3P55318 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.83■□□□□ 0.61
FOXA3P55318 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
FOXA3P55318 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC18.83■□□□□ 0.6
FOXA3P55318 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA3P55318 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
FOXA3P55318 AC020928.2-201ENST00000588717 2197 ntBASIC18.82■□□□□ 0.6
FOXA3P55318 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
FOXA3P55318 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA3P55318 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
FOXA3P55318 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.82■□□□□ 0.6
FOXA3P55318 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC18.82■□□□□ 0.6
FOXA3P55318 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA3P55318 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
FOXA3P55318 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA3P55318 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA3P55318 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
FOXA3P55318 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA3P55318 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC18.8■□□□□ 0.6
FOXA3P55318 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC18.8■□□□□ 0.6
FOXA3P55318 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA3P55318 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
FOXA3P55318 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA3P55318 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
FOXA3P55318 SNAI3-AS1-204ENST00000567997 2048 ntBASIC18.79■□□□□ 0.6
FOXA3P55318 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA3P55318 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA3P55318 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
FOXA3P55318 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
FOXA3P55318 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA3P55318 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
FOXA3P55318 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
FOXA3P55318 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.77■□□□□ 0.6
FOXA3P55318 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
FOXA3P55318 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA3P55318 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC18.76■□□□□ 0.59
FOXA3P55318 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA3P55318 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
FOXA3P55318 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
FOXA3P55318 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA3P55318 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA3P55318 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
FOXA3P55318 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA3P55318 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA3P55318 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA3P55318 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
FOXA3P55318 AP002414.2-202ENST00000590929 1450 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms