Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 EIF2B4-209ENST00000478311 607 ntTSL 215.73■□□□□ 0.118e-9■□□□□ 10.7
U2AF1Q01081 USP3-219ENST00000561326 543 ntTSL 413.66□□□□□ -0.228e-9■□□□□ 10.7
U2AF1Q01081 USP3-206ENST00000558157 2439 ntTSL 1 (best)13.46□□□□□ -0.258e-9■□□□□ 10.7
U2AF1Q01081 USP3-216ENST00000559873 584 ntTSL 513.44□□□□□ -0.268e-9■□□□□ 10.7
U2AF1Q01081 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC11.52□□□□□ -0.568e-9■□□□□ 10.7
U2AF1Q01081 USP3-217ENST00000560070 545 ntTSL 411.48□□□□□ -0.578e-9■□□□□ 10.7
U2AF1Q01081 USP3-201ENST00000268049 5311 ntTSL 5 BASIC9.73□□□□□ -0.858e-9■□□□□ 10.7
U2AF1Q01081 LARS-215ENST00000514104 509 ntTSL 29.65□□□□□ -0.868e-9■□□□□ 10.7
U2AF1Q01081 USP3-210ENST00000559192 5499 ntTSL 1 (best)8.98□□□□□ -0.978e-9■□□□□ 10.7
U2AF1Q01081 USP3-215ENST00000559771 561 ntTSL 47.75□□□□□ -1.178e-9■□□□□ 10.7
U2AF1Q01081 USP3-212ENST00000559276 554 ntTSL 47.75□□□□□ -1.178e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-205ENST00000463426 893 ntTSL 334.83■■■■□ 3.175e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-211ENST00000498562 790 ntTSL 334.63■■■■□ 3.135e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC34.41■■■■□ 3.15e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.89■■■□□ 2.545e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-204ENST00000451881 3724 ntTSL 5 BASIC17.88■□□□□ 0.455e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC16.83■□□□□ 0.295e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-201ENST00000326335 3705 ntTSL 1 (best) BASIC14.01□□□□□ -0.175e-9■□□□□ 10.7
U2AF1Q01081 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC12.69□□□□□ -0.385e-9■□□□□ 10.7
U2AF1Q01081 HNRNPH1-235ENST00000519943 748 ntTSL 23.77□□□□□ -1.812e-9■□□□□ 10.7
U2AF1Q01081 ABCC3-212ENST00000513511 1042 ntTSL 518.57■□□□□ 0.561e-7■□□□□ 10.7
U2AF1Q01081 PAWR-211ENST00000552637 364 ntTSL 227.99■■■□□ 2.072e-6■□□□□ 10.7
U2AF1Q01081 PAWR-206ENST00000548426 494 ntTSL 327.14■■□□□ 1.942e-6■□□□□ 10.7
U2AF1Q01081 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.421e-10■□□□□ 10.7
U2AF1Q01081 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.32e-6■□□□□ 10.7
U2AF1Q01081 NCAPD2-205ENST00000536538 765 ntTSL 332.38■■■□□ 2.777e-11■□□□□ 10.7
U2AF1Q01081 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.037e-11■□□□□ 10.7
U2AF1Q01081 NCAPD2-207ENST00000539084 4290 ntTSL 214.25□□□□□ -0.137e-11■□□□□ 10.7
U2AF1Q01081 NCAPD2-202ENST00000382457 2844 ntTSL 513.59□□□□□ -0.237e-11■□□□□ 10.7
U2AF1Q01081 NCAPD2-208ENST00000539714 533 ntTSL 39.14□□□□□ -0.957e-11■□□□□ 10.7
U2AF1Q01081 NCAPD2-210ENST00000541399 584 ntTSL 58.99□□□□□ -0.977e-11■□□□□ 10.7
U2AF1Q01081 CSNK1D-215ENST00000580784 1081 ntTSL 1 (best)28.51■■■□□ 2.156e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.746e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-201ENST00000269361 1088 ntTSL 523.42■■□□□ 1.346e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC23.22■■□□□ 1.316e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.536e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-217ENST00000581241 6094 ntTSL 218.17■□□□□ 0.56e-7■□□□□ 10.7
U2AF1Q01081 CSNK1D-222ENST00000584377 2891 ntTSL 217.09■□□□□ 0.336e-7■□□□□ 10.7
U2AF1Q01081 CFB-283ENST00000497841 736 ntTSL 39.78□□□□□ -0.843e-13■□□□□ 10.7
U2AF1Q01081 CFB-275ENST00000465750 568 ntTSL 29.55□□□□□ -0.883e-13■□□□□ 10.7
U2AF1Q01081 C10orf10-203ENST00000496638 868 ntTSL 329.03■■■□□ 2.248e-7■□□□□ 10.7
U2AF1Q01081 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.018e-7■□□□□ 10.7
U2AF1Q01081 C10orf10-202ENST00000448778 613 ntTSL 318.22■□□□□ 0.518e-7■□□□□ 10.7
U2AF1Q01081 ZNF207-216ENST00000584416 1092 ntTSL 510.96□□□□□ -0.654e-8■□□□□ 10.7
U2AF1Q01081 PAPD4-211ENST00000508620 483 ntTSL 421.71■■□□□ 1.073e-7■□□□□ 10.7
U2AF1Q01081 PAPD4-205ENST00000502269 705 ntTSL 318.72■□□□□ 0.593e-7■□□□□ 10.7
U2AF1Q01081 A2M-212ENST00000545828 471 ntTSL 46.66□□□□□ -1.341e-6■□□□□ 10.7
U2AF1Q01081 CHTF18-216ENST00000565787 607 ntTSL 531.69■■■□□ 2.667e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-204ENST00000440239 1801 ntTSL 1 (best)30.85■■■□□ 2.537e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-218ENST00000569270 711 ntTSL 525.89■■□□□ 1.747e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-203ENST00000426047 790 ntTSL 321.71■■□□□ 1.077e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.057e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.037e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-211ENST00000491530 819 ntTSL 520.6■□□□□ 0.897e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.847e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-217ENST00000567620 701 ntTSL 520.02■□□□□ 0.87e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-207ENST00000464728 4088 ntTSL 218.97■□□□□ 0.637e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-208ENST00000471202 4494 ntTSL 218.61■□□□□ 0.577e-8■□□□□ 10.6
U2AF1Q01081 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.347e-8■□□□□ 10.6
U2AF1Q01081 E4F1-202ENST00000562589 817 ntTSL 533.61■■■□□ 2.977e-10■□□□□ 10.6
U2AF1Q01081 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC27.24■■□□□ 1.957e-10■□□□□ 10.6
U2AF1Q01081 E4F1-207ENST00000565413 940 ntTSL 326.43■■□□□ 1.827e-10■□□□□ 10.6
U2AF1Q01081 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC26.27■■□□□ 1.87e-10■□□□□ 10.6
U2AF1Q01081 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC25.65■■□□□ 1.77e-10■□□□□ 10.6
U2AF1Q01081 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.497e-10■□□□□ 10.6
U2AF1Q01081 E4F1-209ENST00000569796 5931 ntTSL 221.46■■□□□ 1.037e-10■□□□□ 10.6
U2AF1Q01081 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.677e-10■□□□□ 10.6
U2AF1Q01081 HSDL1-208ENST00000619773 3059 nt10.59□□□□□ -0.717e-10■□□□□ 10.6
U2AF1Q01081 A2M-211ENST00000543436 600 ntTSL 515.19■□□□□ 0.023e-6■□□□□ 10.6
U2AF1Q01081 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.692e-7■□□□□ 10.6
U2AF1Q01081 CHD2-226ENST00000636881 3545 ntTSL 510.61□□□□□ -0.712e-7■□□□□ 10.6
U2AF1Q01081 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC8.55□□□□□ -1.042e-7■□□□□ 10.6
U2AF1Q01081 CHD2-227ENST00000637572 4452 ntTSL 57.15□□□□□ -1.272e-7■□□□□ 10.6
U2AF1Q01081 CHD2-221ENST00000635856 4236 ntTSL 56.93□□□□□ -1.32e-7■□□□□ 10.6
U2AF1Q01081 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC33.02■■■□□ 2.886e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-203ENST00000458730 704 ntTSL 523.74■■□□□ 1.396e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21.93■■□□□ 1.16e-7■□□□□ 10.6
U2AF1Q01081 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.026e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.726e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-202ENST00000450617 1439 ntTSL 519.48■□□□□ 0.716e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.76e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC18.77■□□□□ 0.596e-7■□□□□ 10.6
U2AF1Q01081 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.586e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-216ENST00000542128 4311 ntTSL 5 BASIC15.46■□□□□ 0.076e-7■□□□□ 10.6
U2AF1Q01081 GTPBP1-208ENST00000475959 475 ntTSL 214.92□□□□□ -0.026e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.036e-7■□□□□ 10.6
U2AF1Q01081 PDK1-201ENST00000282077 14193 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.116e-7■□□□□ 10.6
U2AF1Q01081 GTPBP1-204ENST00000460605 581 ntTSL 314.35□□□□□ -0.116e-7■□□□□ 10.6
U2AF1Q01081 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.146e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-205ENST00000441719 8741 ntTSL 213.73□□□□□ -0.216e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-202ENST00000409064 4621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.316e-7■□□□□ 10.6
U2AF1Q01081 PDK1-209ENST00000466437 599 ntTSL 410.57□□□□□ -0.726e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-216ENST00000532384 3237 ntTSL 59.71□□□□□ -0.866e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-211ENST00000529917 1336 ntTSL 1 (best)8.1□□□□□ -1.116e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC7.09□□□□□ -1.276e-7■□□□□ 10.6
U2AF1Q01081 KDM3A-212ENST00000485171 556 ntTSL 46.64□□□□□ -1.356e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-209ENST00000529522 1093 ntTSL 26.63□□□□□ -1.356e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-217ENST00000533422 692 ntTSL 36.41□□□□□ -1.386e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-204ENST00000526228 572 ntTSL 35.83□□□□□ -1.486e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.496e-7■□□□□ 10.6
Retrieved 100 of 10,096 protein–RNA pairs in 301.7 ms