RNA–Protein interactions for RNA: ENST00000394196.8

CHD2-201, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CHD2, Length 9,363 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-201ENST00000394196 MYT1Q01538 1121 aa15.96■□□□□ 0.15
CHD2-201ENST00000394196 PELP1Q8IZL8 1130 aaKnown RBP15.52■□□□□ 0.07
CHD2-201ENST00000394196 TTBK1Q5TCY1 1321 aaPredicted RBP14.88□□□□□ -0.03
CHD2-201ENST00000394196 YTHDC1Q96MU7 727 aaKnown RBP14.56□□□□□ -0.08
CHD2-201ENST00000394196 CCER1Q8TC90 406 aaPredicted RBP14.56□□□□□ -0.08
CHD2-201ENST00000394196 ERICH6Q7L0X2 663 aa14.45□□□□□ -0.1
CHD2-201ENST00000394196 CENPBP07199 599 aaPredicted RBP14.13□□□□□ -0.15
CHD2-201ENST00000394196 RANGAP1P46060 587 aaPredicted RBP13.93□□□□□ -0.18
CHD2-201ENST00000394196 ZEB1P37275 1124 aaPredicted RBP13.85□□□□□ -0.19
CHD2-201ENST00000394196 GLIPR1L2Q4G1C9 344 aa13.77□□□□□ -0.21
CHD2-201ENST00000394196 DCAF8L2P0C7V8 631 aa13.75□□□□□ -0.21
CHD2-201ENST00000394196 NEFLP07196 543 aa13.62□□□□□ -0.23
CHD2-201ENST00000394196 APLP2Q06481 763 aa13.58□□□□□ -0.24
CHD2-201ENST00000394196 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.25
CHD2-201ENST00000394196 RTL5Q5HYW3 569 aaPredicted RBP13.49□□□□□ -0.25
CHD2-201ENST00000394196 DAXXQ9UER7 740 aaPredicted RBP13.47□□□□□ -0.25
CHD2-201ENST00000394196 MYT1LQ9UL68 1186 aa13.39□□□□□ -0.27
CHD2-201ENST00000394196 PCGF6Q9BYE7 350 aa13.33□□□□□ -0.28
CHD2-201ENST00000394196 FAM9AQ8IZU1 332 aaPredicted RBP13.32□□□□□ -0.28
CHD2-201ENST00000394196 CLSPNQ9HAW4 1339 aa13.28□□□□□ -0.28
CHD2-201ENST00000394196 SLC24A1O60721 1099 aa13.17□□□□□ -0.3
CHD2-201ENST00000394196 ZNF316A6NFI3 1004 aaPredicted RBP13.07□□□□□ -0.32
CHD2-201ENST00000394196 POLR3GLQ9BT43 218 aa13.05□□□□□ -0.32
CHD2-201ENST00000394196 EHMT2Q96KQ7 1210 aa12.99□□□□□ -0.33
CHD2-201ENST00000394196 EIF5BO60841 1220 aaKnown RBP12.97□□□□□ -0.33
CHD2-201ENST00000394196 TNNT2P45379 298 aaPredicted RBP12.95□□□□□ -0.34
CHD2-201ENST00000394196 NCLP19338 710 aaKnown RBP12.94□□□□□ -0.34
CHD2-201ENST00000394196 HRCP23327 699 aa12.94□□□□□ -0.34
CHD2-201ENST00000394196 TRIM26Q12899 539 aaPredicted RBP12.91□□□□□ -0.34
CHD2-201ENST00000394196 NISCHQ9Y2I1 1504 aa12.88□□□□□ -0.35
CHD2-201ENST00000394196 SHROOM4Q9ULL8 1493 aa12.88□□□□□ -0.35
CHD2-201ENST00000394196 ANP32BQ92688 251 aaKnown RBP12.8□□□□□ -0.36
CHD2-201ENST00000394196 TRIM44Q96DX7 344 aaPredicted RBP12.79□□□□□ -0.36
CHD2-201ENST00000394196 CDK11BP21127 795 aaKnown RBP12.75□□□□□ -0.37
CHD2-201ENST00000394196 TRIM41Q8WV44 630 aa12.71□□□□□ -0.37
CHD2-201ENST00000394196 CDK11AQ9UQ88 783 aaPredicted RBP12.71□□□□□ -0.37
CHD2-201ENST00000394196 ZNF326Q5BKZ1 582 aaKnown RBP12.71□□□□□ -0.38
CHD2-201ENST00000394196 DIEXFQ68CQ4 756 aaKnown RBP12.64□□□□□ -0.39
CHD2-201ENST00000394196 PTMSP20962 102 aa12.62□□□□□ -0.39
CHD2-201ENST00000394196 ANP32AP39687 249 aaKnown RBP12.62□□□□□ -0.39
CHD2-201ENST00000394196 UBTFP17480 764 aaKnown RBP12.59□□□□□ -0.39
CHD2-201ENST00000394196 GTF3C3Q9Y5Q9 886 aa12.52□□□□□ -0.4
CHD2-201ENST00000394196 ATP1B4Q9UN42 357 aaPredicted RBP12.5□□□□□ -0.41
CHD2-201ENST00000394196 ANP32EQ9BTT0 268 aa12.47□□□□□ -0.41
CHD2-201ENST00000394196 ERICH6BQ5W0A0 696 aa12.46□□□□□ -0.41
CHD2-201ENST00000394196 ZBTB47Q9UFB7 747 aaPredicted RBP12.44□□□□□ -0.42
CHD2-201ENST00000394196 CALRP27797 417 aaKnown RBP12.41□□□□□ -0.42
CHD2-201ENST00000394196 BCL11AQ9H165 835 aa12.4□□□□□ -0.42
CHD2-201ENST00000394196 ACIN1Q9UKV3 1341 aaKnown RBP12.38□□□□□ -0.43
CHD2-201ENST00000394196 ANP32CO43423 234 aa12.36□□□□□ -0.43
CHD2-201ENST00000394196 NEFMP07197 916 aa12.29□□□□□ -0.44
CHD2-201ENST00000394196 UPF2Q9HAU5 1272 aaKnown RBP12.29□□□□□ -0.44
CHD2-201ENST00000394196 HMGB1P09429 215 aaKnown RBP12.29□□□□□ -0.44
CHD2-201ENST00000394196 CNGB1Q14028 1251 aaPredicted RBP12.23□□□□□ -0.45
CHD2-201ENST00000394196 BCANQ96GW7 911 aa12.2□□□□□ -0.46
CHD2-201ENST00000394196 HSP90AA1P07900 732 aaKnown RBP12.19□□□□□ -0.46
CHD2-201ENST00000394196 PPARGC1BQ86YN6 1023 aaKnown RBP12.18□□□□□ -0.46
CHD2-201ENST00000394196 LAS1LQ9Y4W2 734 aaKnown RBP12.17□□□□□ -0.46
CHD2-201ENST00000394196 CANXP27824 592 aaKnown RBP12.16□□□□□ -0.46
CHD2-201ENST00000394196 HNRNPUL2Q1KMD3 747 aaKnown RBP12.15□□□□□ -0.46
CHD2-201ENST00000394196 TNNT3P45378 269 aaPredicted RBP12.15□□□□□ -0.47
CHD2-201ENST00000394196 ARID4BQ4LE39 1312 aaPredicted RBP12.14□□□□□ -0.47
CHD2-201ENST00000394196 NAP1L5Q96NT1 182 aaPredicted RBP12.13□□□□□ -0.47
CHD2-201ENST00000394196 A0A0U1RQG5 324 aaPredicted RBP12.12□□□□□ -0.47
CHD2-201ENST00000394196 ITGAEP38570 1179 aa12.12□□□□□ -0.47
CHD2-201ENST00000394196 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.11□□□□□ -0.47
CHD2-201ENST00000394196 DDRGK1Q96HY6 314 aa12.1□□□□□ -0.47
CHD2-201ENST00000394196 SLC4A1APQ9BWU0 796 aaKnown RBP12.1□□□□□ -0.47
CHD2-201ENST00000394196 PODXL2Q9NZ53 605 aa12.1□□□□□ -0.47
CHD2-201ENST00000394196 GOLGA6L22H0YM25 854 aa12.08□□□□□ -0.48
CHD2-201ENST00000394196 NPM2Q86SE8 214 aaKnown RBP12.06□□□□□ -0.48
CHD2-201ENST00000394196 APPP05067 770 aa12.06□□□□□ -0.48
CHD2-201ENST00000394196 CHAF1AQ13111 956 aaPredicted RBP12.05□□□□□ -0.48
CHD2-201ENST00000394196 RSPH6AQ9H0K4 717 aa12.04□□□□□ -0.48
CHD2-201ENST00000394196 PNNQ9H307 717 aaKnown RBP12.03□□□□□ -0.48
CHD2-201ENST00000394196 PPM1GO15355 546 aaPredicted RBP12.03□□□□□ -0.48
CHD2-201ENST00000394196 BECN1Q14457 450 aa12.03□□□□□ -0.48
CHD2-201ENST00000394196 FKBP8Q14318 412 aa12.02□□□□□ -0.49
CHD2-201ENST00000394196 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.01□□□□□ -0.49
CHD2-201ENST00000394196 NBR1Q14596 966 aa12.01□□□□□ -0.49
CHD2-201ENST00000394196 CHIC1Q5VXU3 224 aa11.98□□□□□ -0.49
CHD2-201ENST00000394196 SETQ01105 290 aaPredicted RBP11.98□□□□□ -0.49
CHD2-201ENST00000394196 USP35Q9P2H5 1018 aa11.98□□□□□ -0.49
CHD2-201ENST00000394196 HOMEZQ8IX15 550 aa11.98□□□□□ -0.49
CHD2-201ENST00000394196 L1TD1Q5T7N2 865 aaKnown RBP11.96□□□□□ -0.49
CHD2-201ENST00000394196 GOLGA6L6A8MZA4 724 aa11.96□□□□□ -0.49
CHD2-201ENST00000394196 PKNOX2Q96KN3 472 aa11.95□□□□□ -0.5
CHD2-201ENST00000394196 CCDC136Q96JN2 1154 aa11.94□□□□□ -0.5
CHD2-201ENST00000394196 DNTTIP2Q5QJE6 756 aaKnown RBP11.94□□□□□ -0.5
CHD2-201ENST00000394196 LOC105371045A0A1W2PR82 267 aa11.94□□□□□ -0.5
CHD2-201ENST00000394196 NRDCO43847 1150 aa11.92□□□□□ -0.5
CHD2-201ENST00000394196 HSP90AA2PQ14568 343 aaPredicted RBP11.91□□□□□ -0.5
CHD2-201ENST00000394196 STK11IPQ8N1F8 1099 aa11.9□□□□□ -0.5
CHD2-201ENST00000394196 NEUROD1Q13562 356 aa11.89□□□□□ -0.51
CHD2-201ENST00000394196 GOLGA6L3A6NEY3 463 aa11.89□□□□□ -0.51
CHD2-201ENST00000394196 TRIM52Q96A61 297 aa11.89□□□□□ -0.51
CHD2-201ENST00000394196 FAM50AQ14320 339 aaKnown RBP11.89□□□□□ -0.51
CHD2-201ENST00000394196 PTMAP06454 111 aaKnown RBP11.88□□□□□ -0.51
CHD2-201ENST00000394196 GOLGA6L1Q8N7Z2 621 aa11.87□□□□□ -0.51
CHD2-201ENST00000394196 PRKCSHP14314 528 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms