Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.37■■□□□ 1.17
MMP28Q9H239 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
MMP28Q9H239 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
MMP28Q9H239 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.36■■□□□ 1.17
MMP28Q9H239 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC22.36■■□□□ 1.17
MMP28Q9H239 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
MMP28Q9H239 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MMP28Q9H239 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
MMP28Q9H239 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.35■■□□□ 1.17
MMP28Q9H239 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
MMP28Q9H239 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
MMP28Q9H239 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MMP28Q9H239 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
MMP28Q9H239 BX255925.1-201ENST00000566954 1854 ntBASIC22.33■■□□□ 1.17
MMP28Q9H239 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
MMP28Q9H239 RARRES2P7-201ENST00000567349 469 ntBASIC22.33■■□□□ 1.17
MMP28Q9H239 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MMP28Q9H239 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MMP28Q9H239 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MMP28Q9H239 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MMP28Q9H239 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.32■■□□□ 1.16
MMP28Q9H239 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MMP28Q9H239 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
MMP28Q9H239 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MMP28Q9H239 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MMP28Q9H239 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
MMP28Q9H239 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
MMP28Q9H239 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MMP28Q9H239 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC22.3■■□□□ 1.16
MMP28Q9H239 SHF-208ENST00000560734 1731 ntTSL 3 BASIC22.29■■□□□ 1.16
MMP28Q9H239 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MMP28Q9H239 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
MMP28Q9H239 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
MMP28Q9H239 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.29■■□□□ 1.16
MMP28Q9H239 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MMP28Q9H239 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MMP28Q9H239 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
MMP28Q9H239 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC22.28■■□□□ 1.16
MMP28Q9H239 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.27■■□□□ 1.16
MMP28Q9H239 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MMP28Q9H239 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC22.27■■□□□ 1.16
MMP28Q9H239 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC22.27■■□□□ 1.16
MMP28Q9H239 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MMP28Q9H239 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
MMP28Q9H239 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
MMP28Q9H239 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MMP28Q9H239 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MMP28Q9H239 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC22.26■■□□□ 1.15
MMP28Q9H239 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC22.26■■□□□ 1.15
MMP28Q9H239 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MMP28Q9H239 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC22.25■■□□□ 1.15
MMP28Q9H239 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MMP28Q9H239 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.25■■□□□ 1.15
MMP28Q9H239 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
MMP28Q9H239 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
MMP28Q9H239 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC22.23■■□□□ 1.15
MMP28Q9H239 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
MMP28Q9H239 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.23■■□□□ 1.15
MMP28Q9H239 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MMP28Q9H239 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MMP28Q9H239 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC22.22■■□□□ 1.15
MMP28Q9H239 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MMP28Q9H239 SETD8P1-201ENST00000623146 1180 ntBASIC22.22■■□□□ 1.15
MMP28Q9H239 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MMP28Q9H239 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
MMP28Q9H239 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.21■■□□□ 1.15
MMP28Q9H239 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MMP28Q9H239 AC020928.2-201ENST00000588717 2197 ntBASIC22.21■■□□□ 1.15
MMP28Q9H239 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
MMP28Q9H239 AL133380.1-201ENST00000506013 324 ntBASIC22.21■■□□□ 1.15
MMP28Q9H239 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC22.21■■□□□ 1.15
MMP28Q9H239 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
MMP28Q9H239 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MMP28Q9H239 AC093323.1-202ENST00000635031 2045 ntBASIC22.21■■□□□ 1.15
MMP28Q9H239 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MMP28Q9H239 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
MMP28Q9H239 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
MMP28Q9H239 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.2■■□□□ 1.14
MMP28Q9H239 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.2■■□□□ 1.14
MMP28Q9H239 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
MMP28Q9H239 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MMP28Q9H239 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MMP28Q9H239 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.19■■□□□ 1.14
MMP28Q9H239 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MMP28Q9H239 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MMP28Q9H239 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC22.17■■□□□ 1.14
MMP28Q9H239 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MMP28Q9H239 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.17■■□□□ 1.14
MMP28Q9H239 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
MMP28Q9H239 AC091060.1-201ENST00000623524 1766 ntBASIC22.16■■□□□ 1.14
MMP28Q9H239 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
MMP28Q9H239 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.16■■□□□ 1.14
MMP28Q9H239 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms