Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L11-201ENST00000611504 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L12-201ENST00000614593 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L14-201ENST00000621227 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
VPS35Q96QK1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS35Q96QK1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS35Q96QK1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
VPS35Q96QK1 ABCB10P3-201ENST00000561950 2166 ntBASIC25.45■■□□□ 1.67
VPS35Q96QK1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.45■■□□□ 1.66
VPS35Q96QK1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
VPS35Q96QK1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.45■■□□□ 1.66
VPS35Q96QK1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.44■■□□□ 1.66
VPS35Q96QK1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS35Q96QK1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.43■■□□□ 1.66
VPS35Q96QK1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.43■■□□□ 1.66
VPS35Q96QK1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS35Q96QK1 DUX4L13-201ENST00000554103 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L15-201ENST00000611059 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L23-201ENST00000615195 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L24-201ENST00000617576 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L22-201ENST00000618238 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L20-201ENST00000619712 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L21-201ENST00000622058 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L10-201ENST00000622460 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L25-201ENST00000624915 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
VPS35Q96QK1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.42■■□□□ 1.66
VPS35Q96QK1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
VPS35Q96QK1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
VPS35Q96QK1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
VPS35Q96QK1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.39■■□□□ 1.66
VPS35Q96QK1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.39■■□□□ 1.66
VPS35Q96QK1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
VPS35Q96QK1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
VPS35Q96QK1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.37■■□□□ 1.65
VPS35Q96QK1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
VPS35Q96QK1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.36■■□□□ 1.65
VPS35Q96QK1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS35Q96QK1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
VPS35Q96QK1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.35■■□□□ 1.65
VPS35Q96QK1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS35Q96QK1 AC100797.4-201ENST00000631653 1827 ntBASIC25.34■■□□□ 1.65
VPS35Q96QK1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS35Q96QK1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS35Q96QK1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.33■■□□□ 1.65
VPS35Q96QK1 CR559946.2-201ENST00000623684 991 ntBASIC25.33■■□□□ 1.65
VPS35Q96QK1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS35Q96QK1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.33■■□□□ 1.64
VPS35Q96QK1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 MIR3648-2-201ENST00000581792 180 ntBASIC25.32■■□□□ 1.64
VPS35Q96QK1 MIR3648-1-201ENST00000615959 180 ntBASIC25.32■■□□□ 1.64
VPS35Q96QK1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.31■■□□□ 1.64
VPS35Q96QK1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS35Q96QK1 AC139426.1-201ENST00000568218 2529 ntBASIC25.3■■□□□ 1.64
VPS35Q96QK1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS35Q96QK1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS35Q96QK1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS35Q96QK1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS35Q96QK1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS35Q96QK1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS35Q96QK1 AC110285.7-201ENST00000624417 1536 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms