Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.21■■□□□ 1.47
PTCHD1Q96NR3 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
PTCHD1Q96NR3 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.2■■□□□ 1.46
PTCHD1Q96NR3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.2■■□□□ 1.46
PTCHD1Q96NR3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PTCHD1Q96NR3 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PTCHD1Q96NR3 WHAMMP2-203ENST00000563942 1603 ntBASIC24.19■■□□□ 1.46
PTCHD1Q96NR3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PTCHD1Q96NR3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD1Q96NR3 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC24.18■■□□□ 1.46
PTCHD1Q96NR3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PTCHD1Q96NR3 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
PTCHD1Q96NR3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.17■■□□□ 1.46
PTCHD1Q96NR3 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
PTCHD1Q96NR3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PTCHD1Q96NR3 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.16■■□□□ 1.46
PTCHD1Q96NR3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCHD1Q96NR3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
PTCHD1Q96NR3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PTCHD1Q96NR3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PTCHD1Q96NR3 AL139393.2-201ENST00000608721 2025 ntBASIC24.15■■□□□ 1.46
PTCHD1Q96NR3 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L13-201ENST00000554103 1267 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L15-201ENST00000611059 1267 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L23-201ENST00000615195 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L24-201ENST00000617576 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L22-201ENST00000618238 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L20-201ENST00000619712 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L21-201ENST00000622058 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L10-201ENST00000622460 1267 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 DUX4L25-201ENST00000624915 1269 ntBASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PTCHD1Q96NR3 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCHD1Q96NR3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
PTCHD1Q96NR3 AP004833.2-201ENST00000532228 1454 ntBASIC24.13■■□□□ 1.45
PTCHD1Q96NR3 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 MACF1-219ENST00000484793 834 ntTSL 2 BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PTCHD1Q96NR3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
PTCHD1Q96NR3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.11■■□□□ 1.45
PTCHD1Q96NR3 MIR3648-2-201ENST00000581792 180 ntBASIC24.11■■□□□ 1.45
PTCHD1Q96NR3 MIR3648-1-201ENST00000615959 180 ntBASIC24.11■■□□□ 1.45
PTCHD1Q96NR3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC24.11■■□□□ 1.45
PTCHD1Q96NR3 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC24.1■■□□□ 1.45
PTCHD1Q96NR3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.09■■□□□ 1.45
PTCHD1Q96NR3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
PTCHD1Q96NR3 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC24.09■■□□□ 1.45
PTCHD1Q96NR3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 HLA-V-202ENST00000446817 847 ntBASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 CR559946.2-201ENST00000623684 991 ntBASIC24.08■■□□□ 1.45
PTCHD1Q96NR3 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 AC016575.1-201ENST00000607026 382 ntBASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PTCHD1Q96NR3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 MEST-211ENST00000437945 1455 ntTSL 5 BASIC24.06■■□□□ 1.44
PTCHD1Q96NR3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
PTCHD1Q96NR3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
PTCHD1Q96NR3 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.04■■□□□ 1.44
PTCHD1Q96NR3 HES6-205ENST00000409356 528 ntTSL 2 BASIC24.04■■□□□ 1.44
PTCHD1Q96NR3 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
PTCHD1Q96NR3 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC24.03■■□□□ 1.44
PTCHD1Q96NR3 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.02■■□□□ 1.44
PTCHD1Q96NR3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCHD1Q96NR3 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms