Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 DRD5P2-201ENST00000421395 2012 ntBASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.97■□□□□ 0.95
PDLIM3Q53GG5 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PDLIM3Q53GG5 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
PDLIM3Q53GG5 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM3Q53GG5 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDLIM3Q53GG5 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 AC010864.1-201ENST00000609407 1511 ntBASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDLIM3Q53GG5 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDLIM3Q53GG5 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM3Q53GG5 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PDLIM3Q53GG5 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
PDLIM3Q53GG5 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PDLIM3Q53GG5 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM3Q53GG5 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.91■□□□□ 0.94
PDLIM3Q53GG5 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PDLIM3Q53GG5 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
PDLIM3Q53GG5 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PDLIM3Q53GG5 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.9■□□□□ 0.94
PDLIM3Q53GG5 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
PDLIM3Q53GG5 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PDLIM3Q53GG5 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.89■□□□□ 0.93
PDLIM3Q53GG5 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PDLIM3Q53GG5 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PDLIM3Q53GG5 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PDLIM3Q53GG5 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PDLIM3Q53GG5 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PDLIM3Q53GG5 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.87■□□□□ 0.93
PDLIM3Q53GG5 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM3Q53GG5 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM3Q53GG5 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PDLIM3Q53GG5 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.86■□□□□ 0.93
PDLIM3Q53GG5 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PDLIM3Q53GG5 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PDLIM3Q53GG5 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.84■□□□□ 0.93
PDLIM3Q53GG5 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
PDLIM3Q53GG5 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PDLIM3Q53GG5 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.82■□□□□ 0.92
PDLIM3Q53GG5 DUX4L29-201ENST00000425409 679 ntBASIC20.82■□□□□ 0.92
PDLIM3Q53GG5 AP004833.2-201ENST00000532228 1454 ntBASIC20.81■□□□□ 0.92
PDLIM3Q53GG5 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM3Q53GG5 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM3Q53GG5 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM3Q53GG5 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
PDLIM3Q53GG5 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM3Q53GG5 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM3Q53GG5 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM3Q53GG5 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC20.79■□□□□ 0.92
PDLIM3Q53GG5 AC016575.1-201ENST00000607026 382 ntBASIC20.79■□□□□ 0.92
PDLIM3Q53GG5 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM3Q53GG5 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM3Q53GG5 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PDLIM3Q53GG5 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 MIR3648-2-201ENST00000581792 180 ntBASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 MIR3648-1-201ENST00000615959 180 ntBASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.76■□□□□ 0.91
PDLIM3Q53GG5 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.75■□□□□ 0.91
PDLIM3Q53GG5 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms