Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
USP11P51784 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.23■■■□□ 2.27
USP11P51784 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP11P51784 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
USP11P51784 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.22■■■□□ 2.27
USP11P51784 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.21■■■□□ 2.27
USP11P51784 ABCB10P3-201ENST00000561950 2166 ntBASIC29.21■■■□□ 2.27
USP11P51784 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.21■■■□□ 2.27
USP11P51784 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.21■■■□□ 2.27
USP11P51784 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
USP11P51784 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.2■■■□□ 2.26
USP11P51784 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.2■■■□□ 2.26
USP11P51784 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.18■■■□□ 2.26
USP11P51784 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP11P51784 DUX4L13-201ENST00000554103 1267 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L15-201ENST00000611059 1267 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L23-201ENST00000615195 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L24-201ENST00000617576 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L22-201ENST00000618238 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L20-201ENST00000619712 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L21-201ENST00000622058 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L10-201ENST00000622460 1267 ntBASIC29.18■■■□□ 2.26
USP11P51784 DUX4L25-201ENST00000624915 1269 ntBASIC29.18■■■□□ 2.26
USP11P51784 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC29.18■■■□□ 2.26
USP11P51784 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
USP11P51784 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
USP11P51784 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.18■■■□□ 2.26
USP11P51784 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP11P51784 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.17■■■□□ 2.26
USP11P51784 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.17■■■□□ 2.26
USP11P51784 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP11P51784 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.17■■■□□ 2.26
USP11P51784 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC29.17■■■□□ 2.26
USP11P51784 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
USP11P51784 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
USP11P51784 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.16■■■□□ 2.26
USP11P51784 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.16■■■□□ 2.26
USP11P51784 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.15■■■□□ 2.26
USP11P51784 MACF1-219ENST00000484793 834 ntTSL 2 BASIC29.15■■■□□ 2.26
USP11P51784 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
USP11P51784 PVT1-219ENST00000523427 938 ntTSL 3 BASIC29.15■■■□□ 2.26
USP11P51784 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
USP11P51784 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
USP11P51784 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP11P51784 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
USP11P51784 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
USP11P51784 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
USP11P51784 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
USP11P51784 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.13■■■□□ 2.25
USP11P51784 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
USP11P51784 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.13■■■□□ 2.25
USP11P51784 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP11P51784 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
USP11P51784 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP11P51784 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP11P51784 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
USP11P51784 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.12■■■□□ 2.25
USP11P51784 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.12■■■□□ 2.25
USP11P51784 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.11■■■□□ 2.25
USP11P51784 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.11■■■□□ 2.25
USP11P51784 MIR3648-2-201ENST00000581792 180 ntBASIC29.11■■■□□ 2.25
USP11P51784 MIR3648-1-201ENST00000615959 180 ntBASIC29.11■■■□□ 2.25
USP11P51784 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
USP11P51784 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC29.09■■■□□ 2.25
USP11P51784 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
USP11P51784 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC29.09■■■□□ 2.25
USP11P51784 AC100797.4-201ENST00000631653 1827 ntBASIC29.09■■■□□ 2.25
USP11P51784 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.09■■■□□ 2.25
USP11P51784 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
USP11P51784 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
USP11P51784 AC139426.1-201ENST00000568218 2529 ntBASIC29.08■■■□□ 2.25
USP11P51784 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.08■■■□□ 2.25
USP11P51784 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
USP11P51784 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.08■■■□□ 2.25
USP11P51784 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.08■■■□□ 2.25
USP11P51784 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC29.07■■■□□ 2.24
USP11P51784 CR559946.2-201ENST00000623684 991 ntBASIC29.07■■■□□ 2.24
USP11P51784 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.06■■■□□ 2.24
USP11P51784 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.06■■■□□ 2.24
USP11P51784 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP11P51784 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.05■■■□□ 2.24
USP11P51784 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP11P51784 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
USP11P51784 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.04■■■□□ 2.24
USP11P51784 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC29.04■■■□□ 2.24
USP11P51784 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
USP11P51784 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
USP11P51784 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.02■■■□□ 2.24
USP11P51784 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.02■■■□□ 2.24
USP11P51784 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
USP11P51784 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.24
USP11P51784 AC016575.1-201ENST00000607026 382 ntBASIC29.01■■■□□ 2.23
USP11P51784 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC29.01■■■□□ 2.23
USP11P51784 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
USP11P51784 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
USP11P51784 AC110285.7-201ENST00000624417 1536 ntBASIC29■■■□□ 2.23
USP11P51784 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
USP11P51784 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
USP11P51784 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.99■■■□□ 2.23
USP11P51784 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 8.2 ms