Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NKX2-2O95096 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-2O95096 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.79■■□□□ 1.4
NKX2-2O95096 WHAMMP2-203ENST00000563942 1603 ntBASIC23.79■■□□□ 1.4
NKX2-2O95096 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NKX2-2O95096 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-2O95096 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-2O95096 AC142086.6-201ENST00000621154 1765 ntBASIC23.78■■□□□ 1.4
NKX2-2O95096 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NKX2-2O95096 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.78■■□□□ 1.4
NKX2-2O95096 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC23.78■■□□□ 1.4
NKX2-2O95096 AC100797.4-201ENST00000631653 1827 ntBASIC23.77■■□□□ 1.4
NKX2-2O95096 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.77■■□□□ 1.4
NKX2-2O95096 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-2O95096 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NKX2-2O95096 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
NKX2-2O95096 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-2O95096 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-2O95096 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-2O95096 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-2O95096 AC021231.2-201ENST00000594613 730 ntBASIC23.76■■□□□ 1.39
NKX2-2O95096 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NKX2-2O95096 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
NKX2-2O95096 DUX4L29-201ENST00000425409 679 ntBASIC23.75■■□□□ 1.39
NKX2-2O95096 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.75■■□□□ 1.39
NKX2-2O95096 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-2O95096 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.74■■□□□ 1.39
NKX2-2O95096 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-2O95096 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
NKX2-2O95096 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-2O95096 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.74■■□□□ 1.39
NKX2-2O95096 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-2O95096 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
NKX2-2O95096 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-2O95096 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-2O95096 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-2O95096 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-2O95096 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.73■■□□□ 1.39
NKX2-2O95096 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-2O95096 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
NKX2-2O95096 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.73■■□□□ 1.39
NKX2-2O95096 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-2O95096 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-2O95096 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-2O95096 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-2O95096 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.72■■□□□ 1.39
NKX2-2O95096 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
NKX2-2O95096 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
NKX2-2O95096 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
NKX2-2O95096 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.7■■□□□ 1.38
NKX2-2O95096 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC23.7■■□□□ 1.38
NKX2-2O95096 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.69■■□□□ 1.38
NKX2-2O95096 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.69■■□□□ 1.38
NKX2-2O95096 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
NKX2-2O95096 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
NKX2-2O95096 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
NKX2-2O95096 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.68■■□□□ 1.38
NKX2-2O95096 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.68■■□□□ 1.38
NKX2-2O95096 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC23.67■■□□□ 1.38
NKX2-2O95096 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
NKX2-2O95096 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-2O95096 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
NKX2-2O95096 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.67■■□□□ 1.38
NKX2-2O95096 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NKX2-2O95096 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.65■■□□□ 1.38
NKX2-2O95096 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.65■■□□□ 1.38
NKX2-2O95096 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
NKX2-2O95096 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NKX2-2O95096 AP002414.2-202ENST00000590929 1450 ntBASIC23.63■■□□□ 1.37
NKX2-2O95096 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
NKX2-2O95096 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.63■■□□□ 1.37
NKX2-2O95096 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.63■■□□□ 1.37
NKX2-2O95096 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.63■■□□□ 1.37
NKX2-2O95096 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-2O95096 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NKX2-2O95096 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC23.62■■□□□ 1.37
NKX2-2O95096 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NKX2-2O95096 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.62■■□□□ 1.37
NKX2-2O95096 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
NKX2-2O95096 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NKX2-2O95096 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NKX2-2O95096 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NKX2-2O95096 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.61■■□□□ 1.37
NKX2-2O95096 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
NKX2-2O95096 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NKX2-2O95096 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC23.6■■□□□ 1.37
NKX2-2O95096 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.59■■□□□ 1.37
NKX2-2O95096 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.59■■□□□ 1.37
NKX2-2O95096 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-2O95096 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-2O95096 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-2O95096 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
NKX2-2O95096 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
NKX2-2O95096 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
NKX2-2O95096 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms