Protein–RNA interactions for Protein: Q9Y5G9

PCDHGA4, Protocadherin gamma-A4, humanhuman

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA4Q9Y5G9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA4Q9Y5G9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.31■■□□□ 1.64
PCDHGA4Q9Y5G9 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.31■■□□□ 1.64
PCDHGA4Q9Y5G9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
PCDHGA4Q9Y5G9 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.29■■□□□ 1.64
PCDHGA4Q9Y5G9 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.29■■□□□ 1.64
PCDHGA4Q9Y5G9 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA4Q9Y5G9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA4Q9Y5G9 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA4Q9Y5G9 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
PCDHGA4Q9Y5G9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 MIR3648-2-201ENST00000581792 180 ntBASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 AC016575.1-201ENST00000607026 382 ntBASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 MIR3648-1-201ENST00000615959 180 ntBASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
PCDHGA4Q9Y5G9 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 AC108673.1-201ENST00000510422 1159 ntBASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PCDHGA4Q9Y5G9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
PCDHGA4Q9Y5G9 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PCDHGA4Q9Y5G9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.25■■□□□ 1.63
PCDHGA4Q9Y5G9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.25■■□□□ 1.63
PCDHGA4Q9Y5G9 AC010864.1-201ENST00000609407 1511 ntBASIC25.25■■□□□ 1.63
PCDHGA4Q9Y5G9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
PCDHGA4Q9Y5G9 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHGA4Q9Y5G9 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
PCDHGA4Q9Y5G9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PCDHGA4Q9Y5G9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
PCDHGA4Q9Y5G9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA4Q9Y5G9 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PCDHGA4Q9Y5G9 MIR6090-201ENST00000622481 60 ntBASIC25.23■■□□□ 1.63
PCDHGA4Q9Y5G9 ST7-AS1-201ENST00000456775 1889 ntBASIC25.23■■□□□ 1.63
PCDHGA4Q9Y5G9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
PCDHGA4Q9Y5G9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC25.22■■□□□ 1.63
PCDHGA4Q9Y5G9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PCDHGA4Q9Y5G9 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 HSD17B1P1-201ENST00000590052 955 ntBASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
PCDHGA4Q9Y5G9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA4Q9Y5G9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
PCDHGA4Q9Y5G9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.19■■□□□ 1.62
PCDHGA4Q9Y5G9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PCDHGA4Q9Y5G9 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC25.18■■□□□ 1.62
PCDHGA4Q9Y5G9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.18■■□□□ 1.62
PCDHGA4Q9Y5G9 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
PCDHGA4Q9Y5G9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 DUX4L11-201ENST00000611504 1267 ntBASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 DUX4L12-201ENST00000614593 1267 ntBASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 LINC01971-201ENST00000617888 1048 ntBASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 DUX4L14-201ENST00000621227 1267 ntBASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 CR559946.2-201ENST00000623684 991 ntBASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PCDHGA4Q9Y5G9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.16■■□□□ 1.62
PCDHGA4Q9Y5G9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.16■■□□□ 1.62
PCDHGA4Q9Y5G9 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC25.16■■□□□ 1.62
PCDHGA4Q9Y5G9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC25.16■■□□□ 1.62
PCDHGA4Q9Y5G9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.16■■□□□ 1.62
PCDHGA4Q9Y5G9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.15■■□□□ 1.62
PCDHGA4Q9Y5G9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA4Q9Y5G9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA4Q9Y5G9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PCDHGA4Q9Y5G9 ABCB10P1-201ENST00000614297 2181 ntBASIC25.15■■□□□ 1.62
PCDHGA4Q9Y5G9 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
PCDHGA4Q9Y5G9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PCDHGA4Q9Y5G9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA4Q9Y5G9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC25.12■■□□□ 1.61
PCDHGA4Q9Y5G9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PCDHGA4Q9Y5G9 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PCDHGA4Q9Y5G9 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
PCDHGA4Q9Y5G9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC25.11■■□□□ 1.61
PCDHGA4Q9Y5G9 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC25.1■■□□□ 1.61
PCDHGA4Q9Y5G9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHGA4Q9Y5G9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PCDHGA4Q9Y5G9 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC25.1■■□□□ 1.61
PCDHGA4Q9Y5G9 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA4Q9Y5G9 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PCDHGA4Q9Y5G9 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHGA4Q9Y5G9 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHGA4Q9Y5G9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PCDHGA4Q9Y5G9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.08■■□□□ 1.61
PCDHGA4Q9Y5G9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA4Q9Y5G9 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA4Q9Y5G9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
PCDHGA4Q9Y5G9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
PCDHGA4Q9Y5G9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms