Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LSM4Q9Y4Z0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
LSM4Q9Y4Z0 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LSM4Q9Y4Z0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC20.65■□□□□ 0.9
LSM4Q9Y4Z0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LSM4Q9Y4Z0 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
LSM4Q9Y4Z0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.64■□□□□ 0.89
LSM4Q9Y4Z0 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LSM4Q9Y4Z0 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
LSM4Q9Y4Z0 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LSM4Q9Y4Z0 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LSM4Q9Y4Z0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.61■□□□□ 0.89
LSM4Q9Y4Z0 WASH5P-204ENST00000632292 975 ntBASIC20.61■□□□□ 0.89
LSM4Q9Y4Z0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LSM4Q9Y4Z0 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM4Q9Y4Z0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LSM4Q9Y4Z0 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM4Q9Y4Z0 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LSM4Q9Y4Z0 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM4Q9Y4Z0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LSM4Q9Y4Z0 ABHD17AP4-201ENST00000411545 909 ntBASIC20.59■□□□□ 0.89
LSM4Q9Y4Z0 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 AC087741.3-201ENST00000624270 1347 ntBASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 AL121749.1-202ENST00000609313 2153 ntBASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LSM4Q9Y4Z0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LSM4Q9Y4Z0 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LSM4Q9Y4Z0 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM4Q9Y4Z0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LSM4Q9Y4Z0 DUX4L28-201ENST00000623687 678 ntBASIC20.57■□□□□ 0.88
LSM4Q9Y4Z0 CHML-205ENST00000638160 705 ntTSL 3 BASIC20.57■□□□□ 0.88
LSM4Q9Y4Z0 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LSM4Q9Y4Z0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 MIR7108-201ENST00000614319 87 ntBASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LSM4Q9Y4Z0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM4Q9Y4Z0 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LSM4Q9Y4Z0 MIR762-201ENST00000390236 83 ntBASIC20.54■□□□□ 0.88
LSM4Q9Y4Z0 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.54■□□□□ 0.88
LSM4Q9Y4Z0 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LSM4Q9Y4Z0 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.52■□□□□ 0.88
LSM4Q9Y4Z0 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.52■□□□□ 0.88
LSM4Q9Y4Z0 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LSM4Q9Y4Z0 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LSM4Q9Y4Z0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
LSM4Q9Y4Z0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LSM4Q9Y4Z0 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LSM4Q9Y4Z0 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LSM4Q9Y4Z0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
LSM4Q9Y4Z0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
LSM4Q9Y4Z0 AC010864.1-201ENST00000609407 1511 ntBASIC20.5■□□□□ 0.87
LSM4Q9Y4Z0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.5■□□□□ 0.87
LSM4Q9Y4Z0 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 AC005559.1-201ENST00000589661 871 ntBASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 AC044849.2-201ENST00000606596 710 ntBASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LSM4Q9Y4Z0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LSM4Q9Y4Z0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
LSM4Q9Y4Z0 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.45■□□□□ 0.86
LSM4Q9Y4Z0 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
LSM4Q9Y4Z0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
LSM4Q9Y4Z0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
LSM4Q9Y4Z0 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
LSM4Q9Y4Z0 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.43■□□□□ 0.86
LSM4Q9Y4Z0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC20.43■□□□□ 0.86
LSM4Q9Y4Z0 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.43■□□□□ 0.86
LSM4Q9Y4Z0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
LSM4Q9Y4Z0 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms