Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
HNF4AP41235 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.09■■□□□ 1.61
HNF4AP41235 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HNF4AP41235 RPS2P35-201ENST00000443417 897 ntBASIC25.09■■□□□ 1.61
HNF4AP41235 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HNF4AP41235 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
HNF4AP41235 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
HNF4AP41235 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.09■■□□□ 1.61
HNF4AP41235 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.09■■□□□ 1.61
HNF4AP41235 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
HNF4AP41235 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
HNF4AP41235 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
HNF4AP41235 AC087741.3-201ENST00000624270 1347 ntBASIC25.06■■□□□ 1.6
HNF4AP41235 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HNF4AP41235 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
HNF4AP41235 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
HNF4AP41235 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.05■■□□□ 1.6
HNF4AP41235 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC25.05■■□□□ 1.6
HNF4AP41235 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
HNF4AP41235 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC25.05■■□□□ 1.6
HNF4AP41235 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.04■■□□□ 1.6
HNF4AP41235 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
HNF4AP41235 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
HNF4AP41235 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HNF4AP41235 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.02■■□□□ 1.6
HNF4AP41235 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
HNF4AP41235 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
HNF4AP41235 AC127502.1-201ENST00000399971 1502 ntBASIC25.02■■□□□ 1.6
HNF4AP41235 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HNF4AP41235 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.01■■□□□ 1.59
HNF4AP41235 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HNF4AP41235 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
HNF4AP41235 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
HNF4AP41235 AP004833.2-201ENST00000532228 1454 ntBASIC25■■□□□ 1.59
HNF4AP41235 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
HNF4AP41235 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
HNF4AP41235 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
HNF4AP41235 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
HNF4AP41235 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.98■■□□□ 1.59
HNF4AP41235 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
HNF4AP41235 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.98■■□□□ 1.59
HNF4AP41235 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
HNF4AP41235 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HNF4AP41235 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.97■■□□□ 1.59
HNF4AP41235 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
HNF4AP41235 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HNF4AP41235 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
HNF4AP41235 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
HNF4AP41235 AC108673.1-201ENST00000510422 1159 ntBASIC24.95■■□□□ 1.58
HNF4AP41235 MIR6090-201ENST00000622481 60 ntBASIC24.95■■□□□ 1.58
HNF4AP41235 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
HNF4AP41235 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
HNF4AP41235 AC044849.2-201ENST00000606596 710 ntBASIC24.94■■□□□ 1.58
HNF4AP41235 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
HNF4AP41235 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
HNF4AP41235 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
HNF4AP41235 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
HNF4AP41235 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.93■■□□□ 1.58
HNF4AP41235 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.93■■□□□ 1.58
HNF4AP41235 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
HNF4AP41235 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
HNF4AP41235 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.91■■□□□ 1.58
HNF4AP41235 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
HNF4AP41235 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
HNF4AP41235 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
HNF4AP41235 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
HNF4AP41235 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HNF4AP41235 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.9■■□□□ 1.58
HNF4AP41235 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
HNF4AP41235 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
HNF4AP41235 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
HNF4AP41235 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.89■■□□□ 1.57
HNF4AP41235 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HNF4AP41235 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.88■■□□□ 1.57
HNF4AP41235 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
HNF4AP41235 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
HNF4AP41235 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HNF4AP41235 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.86■■□□□ 1.57
HNF4AP41235 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC24.86■■□□□ 1.57
HNF4AP41235 AC142086.6-201ENST00000621154 1765 ntBASIC24.85■■□□□ 1.57
HNF4AP41235 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.84■■□□□ 1.57
HNF4AP41235 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.84■■□□□ 1.57
HNF4AP41235 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HNF4AP41235 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.84■■□□□ 1.57
HNF4AP41235 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.84■■□□□ 1.57
HNF4AP41235 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HNF4AP41235 DRD5P2-201ENST00000421395 2012 ntBASIC24.84■■□□□ 1.57
HNF4AP41235 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
HNF4AP41235 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
HNF4AP41235 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
HNF4AP41235 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
HNF4AP41235 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.83■■□□□ 1.57
HNF4AP41235 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.82■■□□□ 1.56
HNF4AP41235 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.81■■□□□ 1.56
HNF4AP41235 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
HNF4AP41235 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC24.81■■□□□ 1.56
HNF4AP41235 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HNF4AP41235 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
HNF4AP41235 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.8■■□□□ 1.56
HNF4AP41235 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms