Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
RFC3P40938 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.76■■□□□ 1.39
RFC3P40938 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.75■■□□□ 1.39
RFC3P40938 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RFC3P40938 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
RFC3P40938 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
RFC3P40938 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
RFC3P40938 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RFC3P40938 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.73■■□□□ 1.39
RFC3P40938 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RFC3P40938 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
RFC3P40938 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC23.72■■□□□ 1.39
RFC3P40938 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RFC3P40938 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RFC3P40938 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
RFC3P40938 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
RFC3P40938 AL135925.1-201ENST00000605920 1701 ntBASIC23.71■■□□□ 1.39
RFC3P40938 MIR4449-201ENST00000578365 66 ntBASIC23.71■■□□□ 1.39
RFC3P40938 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.71■■□□□ 1.39
RFC3P40938 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.7■■□□□ 1.38
RFC3P40938 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.7■■□□□ 1.38
RFC3P40938 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFC3P40938 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RFC3P40938 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RFC3P40938 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L13-201ENST00000554103 1267 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L15-201ENST00000611059 1267 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L23-201ENST00000615195 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L24-201ENST00000617576 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L22-201ENST00000618238 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L20-201ENST00000619712 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L21-201ENST00000622058 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L10-201ENST00000622460 1267 ntBASIC23.69■■□□□ 1.38
RFC3P40938 DUX4L25-201ENST00000624915 1269 ntBASIC23.69■■□□□ 1.38
RFC3P40938 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
RFC3P40938 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.68■■□□□ 1.38
RFC3P40938 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RFC3P40938 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFC3P40938 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RFC3P40938 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.67■■□□□ 1.38
RFC3P40938 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.67■■□□□ 1.38
RFC3P40938 AC127502.1-201ENST00000399971 1502 ntBASIC23.67■■□□□ 1.38
RFC3P40938 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RFC3P40938 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.66■■□□□ 1.38
RFC3P40938 LINC00273-201ENST00000539813 1452 ntBASIC23.65■■□□□ 1.38
RFC3P40938 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
RFC3P40938 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
RFC3P40938 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RFC3P40938 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.37
RFC3P40938 HES6-205ENST00000409356 528 ntTSL 2 BASIC23.64■■□□□ 1.37
RFC3P40938 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.64■■□□□ 1.37
RFC3P40938 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RFC3P40938 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RFC3P40938 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.63■■□□□ 1.37
RFC3P40938 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.63■■□□□ 1.37
RFC3P40938 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RFC3P40938 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RFC3P40938 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RFC3P40938 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RFC3P40938 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
RFC3P40938 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RFC3P40938 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RFC3P40938 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RFC3P40938 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.6■■□□□ 1.37
RFC3P40938 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RFC3P40938 CHST11-202ENST00000546689 756 ntTSL 2 BASIC23.59■■□□□ 1.37
RFC3P40938 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.59■■□□□ 1.37
RFC3P40938 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.59■■□□□ 1.37
RFC3P40938 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
RFC3P40938 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RFC3P40938 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
RFC3P40938 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
RFC3P40938 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RFC3P40938 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.57■■□□□ 1.36
RFC3P40938 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.56■■□□□ 1.36
RFC3P40938 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RFC3P40938 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC23.56■■□□□ 1.36
RFC3P40938 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
RFC3P40938 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RFC3P40938 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RFC3P40938 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC23.54■■□□□ 1.36
RFC3P40938 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
RFC3P40938 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
RFC3P40938 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
RFC3P40938 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
RFC3P40938 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC23.52■■□□□ 1.36
RFC3P40938 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
RFC3P40938 WHAMMP2-203ENST00000563942 1603 ntBASIC23.52■■□□□ 1.36
RFC3P40938 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC23.51■■□□□ 1.35
RFC3P40938 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
RFC3P40938 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.51■■□□□ 1.35
RFC3P40938 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RFC3P40938 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
RFC3P40938 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
RFC3P40938 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.5■■□□□ 1.35
RFC3P40938 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
RFC3P40938 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
RFC3P40938 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
RFC3P40938 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC23.5■■□□□ 1.35
RFC3P40938 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms