Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 LINC00273-201ENST00000539813 1452 ntBASIC30.84■■■□□ 2.53
SHMT1P34896 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHMT1P34896 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.84■■■□□ 2.53
SHMT1P34896 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHMT1P34896 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.83■■■□□ 2.53
SHMT1P34896 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
SHMT1P34896 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.82■■■□□ 2.52
SHMT1P34896 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHMT1P34896 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHMT1P34896 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SHMT1P34896 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.81■■■□□ 2.52
SHMT1P34896 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.81■■■□□ 2.52
SHMT1P34896 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.8■■■□□ 2.52
SHMT1P34896 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SHMT1P34896 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
SHMT1P34896 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
SHMT1P34896 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
SHMT1P34896 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
SHMT1P34896 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC30.76■■■□□ 2.51
SHMT1P34896 AC127502.1-201ENST00000399971 1502 ntBASIC30.76■■■□□ 2.51
SHMT1P34896 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
SHMT1P34896 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SHMT1P34896 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.74■■■□□ 2.51
SHMT1P34896 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.74■■■□□ 2.51
SHMT1P34896 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.73■■■□□ 2.51
SHMT1P34896 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHMT1P34896 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
SHMT1P34896 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.73■■■□□ 2.51
SHMT1P34896 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.72■■■□□ 2.51
SHMT1P34896 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
SHMT1P34896 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.72■■■□□ 2.51
SHMT1P34896 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
SHMT1P34896 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.71■■■□□ 2.51
SHMT1P34896 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.71■■■□□ 2.51
SHMT1P34896 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.7■■■□□ 2.51
SHMT1P34896 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.7■■■□□ 2.51
SHMT1P34896 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHMT1P34896 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.69■■■□□ 2.5
SHMT1P34896 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
SHMT1P34896 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SHMT1P34896 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
SHMT1P34896 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
SHMT1P34896 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.64■■■□□ 2.5
SHMT1P34896 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.64■■■□□ 2.5
SHMT1P34896 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.63■■■□□ 2.49
SHMT1P34896 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHMT1P34896 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC30.62■■■□□ 2.49
SHMT1P34896 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHMT1P34896 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SHMT1P34896 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SHMT1P34896 AC135983.2-203ENST00000454486 1613 ntBASIC30.61■■■□□ 2.49
SHMT1P34896 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
SHMT1P34896 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
SHMT1P34896 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SHMT1P34896 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
SHMT1P34896 WHAMMP2-203ENST00000563942 1603 ntBASIC30.59■■■□□ 2.49
SHMT1P34896 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
SHMT1P34896 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
SHMT1P34896 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHMT1P34896 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC30.58■■■□□ 2.49
SHMT1P34896 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHMT1P34896 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
SHMT1P34896 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.58■■■□□ 2.49
SHMT1P34896 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
SHMT1P34896 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC30.57■■■□□ 2.48
SHMT1P34896 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.57■■■□□ 2.48
SHMT1P34896 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.56■■■□□ 2.48
SHMT1P34896 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
SHMT1P34896 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.56■■■□□ 2.48
SHMT1P34896 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
SHMT1P34896 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.54■■■□□ 2.48
SHMT1P34896 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
SHMT1P34896 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.54■■■□□ 2.48
SHMT1P34896 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.53■■■□□ 2.48
SHMT1P34896 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.52■■■□□ 2.48
SHMT1P34896 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
SHMT1P34896 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.51■■■□□ 2.48
SHMT1P34896 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHMT1P34896 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHMT1P34896 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHMT1P34896 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SHMT1P34896 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
SHMT1P34896 HSD17B1P1-201ENST00000590052 955 ntBASIC30.5■■■□□ 2.47
SHMT1P34896 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.5■■■□□ 2.47
SHMT1P34896 ST7-AS1-201ENST00000456775 1889 ntBASIC30.49■■■□□ 2.47
SHMT1P34896 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.48■■■□□ 2.47
SHMT1P34896 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.48■■■□□ 2.47
SHMT1P34896 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SHMT1P34896 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SHMT1P34896 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.47■■■□□ 2.47
SHMT1P34896 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SHMT1P34896 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC30.47■■■□□ 2.47
SHMT1P34896 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHMT1P34896 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
SHMT1P34896 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.44■■■□□ 2.46
SHMT1P34896 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
SHMT1P34896 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.44■■■□□ 2.46
SHMT1P34896 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.44■■■□□ 2.46
SHMT1P34896 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.44■■■□□ 2.46
SHMT1P34896 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.43■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 153.5 ms