Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HMGB3O15347 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGB3O15347 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB3O15347 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGB3O15347 AL135925.1-201ENST00000605920 1701 ntBASIC20.78■□□□□ 0.92
HMGB3O15347 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HMGB3O15347 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGB3O15347 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGB3O15347 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
HMGB3O15347 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGB3O15347 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB3O15347 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGB3O15347 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGB3O15347 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
HMGB3O15347 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGB3O15347 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGB3O15347 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGB3O15347 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGB3O15347 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HMGB3O15347 AL121749.1-202ENST00000609313 2153 ntBASIC20.7■□□□□ 0.91
HMGB3O15347 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB3O15347 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HMGB3O15347 AC135731.1-201ENST00000569415 2548 ntBASIC20.69■□□□□ 0.9
HMGB3O15347 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HMGB3O15347 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB3O15347 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HMGB3O15347 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB3O15347 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
HMGB3O15347 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HMGB3O15347 DRD5P2-201ENST00000421395 2012 ntBASIC20.68■□□□□ 0.9
HMGB3O15347 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
HMGB3O15347 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HMGB3O15347 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
HMGB3O15347 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HMGB3O15347 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB3O15347 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HMGB3O15347 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HMGB3O15347 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HMGB3O15347 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
HMGB3O15347 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 AL139393.2-201ENST00000608721 2025 ntBASIC20.64■□□□□ 0.89
HMGB3O15347 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HMGB3O15347 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB3O15347 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HMGB3O15347 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.62■□□□□ 0.89
HMGB3O15347 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGB3O15347 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB3O15347 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGB3O15347 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGB3O15347 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB3O15347 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGB3O15347 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGB3O15347 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGB3O15347 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HMGB3O15347 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
HMGB3O15347 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
HMGB3O15347 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGB3O15347 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HMGB3O15347 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HMGB3O15347 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
HMGB3O15347 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
HMGB3O15347 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
HMGB3O15347 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
HMGB3O15347 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.57■□□□□ 0.88
HMGB3O15347 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
HMGB3O15347 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.56■□□□□ 0.88
HMGB3O15347 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms