Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
LSM1O15116 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
LSM1O15116 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
LSM1O15116 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
LSM1O15116 AC097358.2-201ENST00000607541 1159 ntBASIC24.93■■□□□ 1.58
LSM1O15116 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC24.93■■□□□ 1.58
LSM1O15116 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
LSM1O15116 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.92■■□□□ 1.58
LSM1O15116 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
LSM1O15116 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC24.91■■□□□ 1.58
LSM1O15116 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC24.91■■□□□ 1.58
LSM1O15116 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LSM1O15116 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
LSM1O15116 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
LSM1O15116 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
LSM1O15116 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
LSM1O15116 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC24.88■■□□□ 1.57
LSM1O15116 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
LSM1O15116 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.88■■□□□ 1.57
LSM1O15116 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
LSM1O15116 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
LSM1O15116 AP004833.2-201ENST00000532228 1454 ntBASIC24.88■■□□□ 1.57
LSM1O15116 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
LSM1O15116 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.87■■□□□ 1.57
LSM1O15116 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.87■■□□□ 1.57
LSM1O15116 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
LSM1O15116 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
LSM1O15116 AC127502.1-201ENST00000399971 1502 ntBASIC24.86■■□□□ 1.57
LSM1O15116 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
LSM1O15116 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LSM1O15116 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
LSM1O15116 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC24.85■■□□□ 1.57
LSM1O15116 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LSM1O15116 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
LSM1O15116 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
LSM1O15116 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
LSM1O15116 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
LSM1O15116 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC24.82■■□□□ 1.56
LSM1O15116 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC24.82■■□□□ 1.56
LSM1O15116 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
LSM1O15116 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
LSM1O15116 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
LSM1O15116 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
LSM1O15116 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
LSM1O15116 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
LSM1O15116 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.81■■□□□ 1.56
LSM1O15116 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
LSM1O15116 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
LSM1O15116 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
LSM1O15116 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LSM1O15116 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC24.78■■□□□ 1.56
LSM1O15116 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
LSM1O15116 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC24.78■■□□□ 1.56
LSM1O15116 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
LSM1O15116 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
LSM1O15116 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
LSM1O15116 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.77■■□□□ 1.56
LSM1O15116 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC24.77■■□□□ 1.56
LSM1O15116 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
LSM1O15116 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC24.76■■□□□ 1.55
LSM1O15116 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
LSM1O15116 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
LSM1O15116 AC135731.1-201ENST00000569415 2548 ntBASIC24.75■■□□□ 1.55
LSM1O15116 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
LSM1O15116 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC24.75■■□□□ 1.55
LSM1O15116 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.75■■□□□ 1.55
LSM1O15116 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
LSM1O15116 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC24.74■■□□□ 1.55
LSM1O15116 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LSM1O15116 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
LSM1O15116 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
LSM1O15116 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.74■■□□□ 1.55
LSM1O15116 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
LSM1O15116 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC24.73■■□□□ 1.55
LSM1O15116 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.73■■□□□ 1.55
LSM1O15116 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC24.73■■□□□ 1.55
LSM1O15116 MIR762-201ENST00000390236 83 ntBASIC24.73■■□□□ 1.55
LSM1O15116 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
LSM1O15116 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
LSM1O15116 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC24.72■■□□□ 1.55
LSM1O15116 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
LSM1O15116 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
LSM1O15116 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
LSM1O15116 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
LSM1O15116 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
LSM1O15116 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
LSM1O15116 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LSM1O15116 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
LSM1O15116 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
LSM1O15116 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
LSM1O15116 AL121749.1-202ENST00000609313 2153 ntBASIC24.69■■□□□ 1.54
LSM1O15116 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.68■■□□□ 1.54
LSM1O15116 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
LSM1O15116 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LSM1O15116 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms