Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 AC044849.2-201ENST00000606596 710 ntBASIC28.99■■■□□ 2.23
NPHP3-ACAD11A0A0J9YXS1 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
NPHP3-ACAD11A0A0J9YXS1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.98■■■□□ 2.23
NPHP3-ACAD11A0A0J9YXS1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.97■■■□□ 2.23
NPHP3-ACAD11A0A0J9YXS1 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.95■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC28.93■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.93■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 AL139393.2-201ENST00000608721 2025 ntBASIC28.93■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.92■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.91■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
NPHP3-ACAD11A0A0J9YXS1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC28.88■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC28.88■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 BOD1-206ENST00000480951 814 ntTSL 2 BASIC28.88■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.88■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.87■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.86■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.86■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.83■■■□□ 2.21
NPHP3-ACAD11A0A0J9YXS1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.81■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.81■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.81■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.79■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 AC021231.2-201ENST00000594613 730 ntBASIC28.78■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
NPHP3-ACAD11A0A0J9YXS1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 EI24-212ENST00000615917 1407 ntTSL 2 BASIC28.76■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.75■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.74■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.72■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 DUX4L29-201ENST00000425409 679 ntBASIC28.71■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
NPHP3-ACAD11A0A0J9YXS1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.7■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.69■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.68■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.68■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.67■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.66■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 LINC00273-201ENST00000539813 1452 ntBASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 WHAMMP2-203ENST00000563942 1603 ntBASIC28.65■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 AC135983.2-203ENST00000454486 1613 ntBASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
NPHP3-ACAD11A0A0J9YXS1 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms