Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NUCKS1Q9H1E3 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
NUCKS1Q9H1E3 CAHM-201ENST00000604200 896 ntBASIC28.39■■■□□ 2.14
NUCKS1Q9H1E3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.39■■■□□ 2.13
NUCKS1Q9H1E3 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
NUCKS1Q9H1E3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
NUCKS1Q9H1E3 SUZ12P1-203ENST00000578195 985 ntBASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
NUCKS1Q9H1E3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC28.36■■■□□ 2.13
NUCKS1Q9H1E3 AL139393.2-201ENST00000608721 2025 ntBASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28.35■■■□□ 2.13
NUCKS1Q9H1E3 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
NUCKS1Q9H1E3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NUCKS1Q9H1E3 AC142086.6-201ENST00000621154 1765 ntBASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 AL391121.1-201ENST00000607967 1349 ntBASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
NUCKS1Q9H1E3 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 AC010864.1-201ENST00000609407 1511 ntBASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC28.31■■■□□ 2.12
NUCKS1Q9H1E3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NUCKS1Q9H1E3 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC28.29■■■□□ 2.12
NUCKS1Q9H1E3 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
NUCKS1Q9H1E3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
NUCKS1Q9H1E3 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NUCKS1Q9H1E3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NUCKS1Q9H1E3 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.25■■■□□ 2.11
NUCKS1Q9H1E3 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NUCKS1Q9H1E3 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NUCKS1Q9H1E3 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
NUCKS1Q9H1E3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.22■■■□□ 2.11
NUCKS1Q9H1E3 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.21■■■□□ 2.11
NUCKS1Q9H1E3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.2■■■□□ 2.11
NUCKS1Q9H1E3 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.2■■■□□ 2.1
NUCKS1Q9H1E3 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NUCKS1Q9H1E3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NUCKS1Q9H1E3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NUCKS1Q9H1E3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NUCKS1Q9H1E3 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
NUCKS1Q9H1E3 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
NUCKS1Q9H1E3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NUCKS1Q9H1E3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
NUCKS1Q9H1E3 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.12■■■□□ 2.09
NUCKS1Q9H1E3 DRD5P2-201ENST00000421395 2012 ntBASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.11■■■□□ 2.09
NUCKS1Q9H1E3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NUCKS1Q9H1E3 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
NUCKS1Q9H1E3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
NUCKS1Q9H1E3 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
NUCKS1Q9H1E3 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
NUCKS1Q9H1E3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
NUCKS1Q9H1E3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.06■■■□□ 2.08
NUCKS1Q9H1E3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
NUCKS1Q9H1E3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
NUCKS1Q9H1E3 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC28.03■■■□□ 2.08
NUCKS1Q9H1E3 AP004833.2-201ENST00000532228 1454 ntBASIC28.03■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms