Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC108673.1-201ENST00000510422 1159 ntBASIC23.75■■□□□ 1.39
COL12A1Q99715 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL12A1Q99715 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL12A1Q99715 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC23.74■■□□□ 1.39
COL12A1Q99715 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL12A1Q99715 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL12A1Q99715 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL12A1Q99715 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL12A1Q99715 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL12A1Q99715 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.71■■□□□ 1.39
COL12A1Q99715 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC23.71■■□□□ 1.39
COL12A1Q99715 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.71■■□□□ 1.39
COL12A1Q99715 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
COL12A1Q99715 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.39
COL12A1Q99715 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.7■■□□□ 1.38
COL12A1Q99715 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL12A1Q99715 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
COL12A1Q99715 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.7■■□□□ 1.38
COL12A1Q99715 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL12A1Q99715 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
COL12A1Q99715 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
COL12A1Q99715 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.68■■□□□ 1.38
COL12A1Q99715 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC23.67■■□□□ 1.38
COL12A1Q99715 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL12A1Q99715 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL12A1Q99715 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC23.66■■□□□ 1.38
COL12A1Q99715 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL12A1Q99715 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
COL12A1Q99715 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC23.65■■□□□ 1.38
COL12A1Q99715 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL12A1Q99715 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC23.63■■□□□ 1.37
COL12A1Q99715 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC23.63■■□□□ 1.37
COL12A1Q99715 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL12A1Q99715 TSPY13P-201ENST00000338964 914 ntBASIC23.63■■□□□ 1.37
COL12A1Q99715 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.63■■□□□ 1.37
COL12A1Q99715 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
COL12A1Q99715 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC23.62■■□□□ 1.37
COL12A1Q99715 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
COL12A1Q99715 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL12A1Q99715 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
COL12A1Q99715 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL12A1Q99715 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23.61■■□□□ 1.37
COL12A1Q99715 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
COL12A1Q99715 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
COL12A1Q99715 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
COL12A1Q99715 AL035685.1-201ENST00000636663 812 ntBASIC23.6■■□□□ 1.37
COL12A1Q99715 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
COL12A1Q99715 GFER-205ENST00000569451 517 ntTSL 5 BASIC23.59■■□□□ 1.37
COL12A1Q99715 RARRES2P1-201ENST00000474487 481 ntBASIC23.58■■□□□ 1.37
COL12A1Q99715 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC23.58■■□□□ 1.37
COL12A1Q99715 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.58■■□□□ 1.37
COL12A1Q99715 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
COL12A1Q99715 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.58■■□□□ 1.36
COL12A1Q99715 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
COL12A1Q99715 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL12A1Q99715 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.56■■□□□ 1.36
COL12A1Q99715 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.56■■□□□ 1.36
COL12A1Q99715 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
COL12A1Q99715 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
COL12A1Q99715 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
COL12A1Q99715 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
COL12A1Q99715 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
COL12A1Q99715 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
COL12A1Q99715 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL12A1Q99715 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL12A1Q99715 HYI-213ENST00000583037 1322 ntTSL 5 BASIC23.52■■□□□ 1.36
COL12A1Q99715 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL12A1Q99715 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
COL12A1Q99715 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL12A1Q99715 MIR935-201ENST00000401179 91 ntBASIC23.49■■□□□ 1.35
COL12A1Q99715 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC23.48■■□□□ 1.35
COL12A1Q99715 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL12A1Q99715 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC23.47■■□□□ 1.35
COL12A1Q99715 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
COL12A1Q99715 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC23.46■■□□□ 1.35
COL12A1Q99715 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.46■■□□□ 1.35
COL12A1Q99715 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
COL12A1Q99715 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC23.46■■□□□ 1.35
COL12A1Q99715 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
COL12A1Q99715 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
COL12A1Q99715 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.45■■□□□ 1.34
COL12A1Q99715 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.45■■□□□ 1.34
COL12A1Q99715 CHML-204ENST00000638121 920 ntTSL 2 BASIC23.44■■□□□ 1.34
COL12A1Q99715 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
COL12A1Q99715 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC23.43■■□□□ 1.34
COL12A1Q99715 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
COL12A1Q99715 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.42■■□□□ 1.34
COL12A1Q99715 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
COL12A1Q99715 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
COL12A1Q99715 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.41■■□□□ 1.34
COL12A1Q99715 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
COL12A1Q99715 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
COL12A1Q99715 AC022413.1-201ENST00000624602 984 ntBASIC23.41■■□□□ 1.34
COL12A1Q99715 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
COL12A1Q99715 U85056.1-201ENST00000616429 682 ntBASIC23.39■■□□□ 1.33
COL12A1Q99715 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC23.39■■□□□ 1.33
COL12A1Q99715 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
COL12A1Q99715 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
COL12A1Q99715 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
COL12A1Q99715 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms