Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC28.7■■■□□ 2.19
TPM1P09493 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
TPM1P09493 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC28.7■■■□□ 2.18
TPM1P09493 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
TPM1P09493 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.69■■■□□ 2.18
TPM1P09493 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
TPM1P09493 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
TPM1P09493 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.68■■■□□ 2.18
TPM1P09493 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
TPM1P09493 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC28.67■■■□□ 2.18
TPM1P09493 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
TPM1P09493 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC28.67■■■□□ 2.18
TPM1P09493 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
TPM1P09493 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
TPM1P09493 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
TPM1P09493 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.66■■■□□ 2.18
TPM1P09493 WASH5P-204ENST00000632292 975 ntBASIC28.66■■■□□ 2.18
TPM1P09493 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.66■■■□□ 2.18
TPM1P09493 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.65■■■□□ 2.18
TPM1P09493 AL139393.2-201ENST00000608721 2025 ntBASIC28.65■■■□□ 2.18
TPM1P09493 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.18
TPM1P09493 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
TPM1P09493 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC28.64■■■□□ 2.18
TPM1P09493 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
TPM1P09493 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
TPM1P09493 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
TPM1P09493 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
TPM1P09493 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
TPM1P09493 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
TPM1P09493 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
TPM1P09493 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
TPM1P09493 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
TPM1P09493 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
TPM1P09493 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
TPM1P09493 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
TPM1P09493 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
TPM1P09493 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.6■■■□□ 2.17
TPM1P09493 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
TPM1P09493 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
TPM1P09493 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
TPM1P09493 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
TPM1P09493 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
TPM1P09493 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.56■■■□□ 2.16
TPM1P09493 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC28.56■■■□□ 2.16
TPM1P09493 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC28.56■■■□□ 2.16
TPM1P09493 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
TPM1P09493 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC28.54■■■□□ 2.16
TPM1P09493 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
TPM1P09493 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.53■■■□□ 2.16
TPM1P09493 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.52■■■□□ 2.16
TPM1P09493 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
TPM1P09493 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.51■■■□□ 2.16
TPM1P09493 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.51■■■□□ 2.15
TPM1P09493 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
TPM1P09493 DRD5P2-201ENST00000421395 2012 ntBASIC28.5■■■□□ 2.15
TPM1P09493 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
TPM1P09493 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
TPM1P09493 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC28.49■■■□□ 2.15
TPM1P09493 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
TPM1P09493 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
TPM1P09493 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC28.48■■■□□ 2.15
TPM1P09493 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
TPM1P09493 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.47■■■□□ 2.15
TPM1P09493 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.46■■■□□ 2.15
TPM1P09493 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
TPM1P09493 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
TPM1P09493 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.46■■■□□ 2.15
TPM1P09493 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
TPM1P09493 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
TPM1P09493 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
TPM1P09493 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.44■■■□□ 2.14
TPM1P09493 AL133380.1-201ENST00000506013 324 ntBASIC28.44■■■□□ 2.14
TPM1P09493 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
TPM1P09493 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
TPM1P09493 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
TPM1P09493 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.43■■■□□ 2.14
TPM1P09493 AC010864.1-201ENST00000609407 1511 ntBASIC28.43■■■□□ 2.14
TPM1P09493 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
TPM1P09493 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC28.4■■■□□ 2.14
TPM1P09493 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
TPM1P09493 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
TPM1P09493 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
TPM1P09493 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC28.39■■■□□ 2.14
TPM1P09493 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.37■■■□□ 2.13
TPM1P09493 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
TPM1P09493 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC28.37■■■□□ 2.13
TPM1P09493 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
TPM1P09493 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
TPM1P09493 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.36■■■□□ 2.13
TPM1P09493 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
TPM1P09493 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
TPM1P09493 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
TPM1P09493 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC28.35■■■□□ 2.13
TPM1P09493 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.35■■■□□ 2.13
TPM1P09493 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
TPM1P09493 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
TPM1P09493 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
TPM1P09493 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
TPM1P09493 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
TPM1P09493 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms