Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 AC044849.2-201ENST00000606596 710 ntBASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRAV41A0A0B4J266 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
TRAV41A0A0B4J266 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TRAV41A0A0B4J266 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
TRAV41A0A0B4J266 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.69■□□□□ 0.9
TRAV41A0A0B4J266 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV41A0A0B4J266 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.69■□□□□ 0.9
TRAV41A0A0B4J266 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV41A0A0B4J266 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRAV41A0A0B4J266 AC108673.1-201ENST00000510422 1159 ntBASIC20.68■□□□□ 0.9
TRAV41A0A0B4J266 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRAV41A0A0B4J266 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TRAV41A0A0B4J266 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV41A0A0B4J266 ST7-AS1-201ENST00000456775 1889 ntBASIC20.65■□□□□ 0.9
TRAV41A0A0B4J266 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV41A0A0B4J266 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRAV41A0A0B4J266 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.65■□□□□ 0.9
TRAV41A0A0B4J266 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV41A0A0B4J266 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRAV41A0A0B4J266 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV41A0A0B4J266 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV41A0A0B4J266 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.64■□□□□ 0.89
TRAV41A0A0B4J266 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV41A0A0B4J266 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV41A0A0B4J266 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV41A0A0B4J266 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV41A0A0B4J266 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV41A0A0B4J266 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.6■□□□□ 0.89
TRAV41A0A0B4J266 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV41A0A0B4J266 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV41A0A0B4J266 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRAV41A0A0B4J266 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.59■□□□□ 0.89
TRAV41A0A0B4J266 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
TRAV41A0A0B4J266 MIR6090-201ENST00000622481 60 ntBASIC20.59■□□□□ 0.89
TRAV41A0A0B4J266 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV41A0A0B4J266 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.58■□□□□ 0.89
TRAV41A0A0B4J266 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.58■□□□□ 0.89
TRAV41A0A0B4J266 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV41A0A0B4J266 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV41A0A0B4J266 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TRAV41A0A0B4J266 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV41A0A0B4J266 ABCB10P1-201ENST00000614297 2181 ntBASIC20.56■□□□□ 0.88
TRAV41A0A0B4J266 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV41A0A0B4J266 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.56■□□□□ 0.88
TRAV41A0A0B4J266 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV41A0A0B4J266 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV41A0A0B4J266 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
TRAV41A0A0B4J266 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV41A0A0B4J266 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAV41A0A0B4J266 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
TRAV41A0A0B4J266 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.54■□□□□ 0.88
TRAV41A0A0B4J266 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV41A0A0B4J266 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TRAV41A0A0B4J266 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRAV41A0A0B4J266 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TRAV41A0A0B4J266 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV41A0A0B4J266 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.51■□□□□ 0.87
TRAV41A0A0B4J266 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV41A0A0B4J266 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV41A0A0B4J266 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.5■□□□□ 0.87
TRAV41A0A0B4J266 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV41A0A0B4J266 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV41A0A0B4J266 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV41A0A0B4J266 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
TRAV41A0A0B4J266 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC20.49■□□□□ 0.87
TRAV41A0A0B4J266 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV41A0A0B4J266 EI24-212ENST00000615917 1407 ntTSL 2 BASIC20.48■□□□□ 0.87
TRAV41A0A0B4J266 DUX4L29-201ENST00000425409 679 ntBASIC20.47■□□□□ 0.87
TRAV41A0A0B4J266 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAV41A0A0B4J266 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV41A0A0B4J266 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRAV41A0A0B4J266 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC20.46■□□□□ 0.87
TRAV41A0A0B4J266 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRAV41A0A0B4J266 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAV41A0A0B4J266 AC127502.1-201ENST00000399971 1502 ntBASIC20.46■□□□□ 0.87
TRAV41A0A0B4J266 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
TRAV41A0A0B4J266 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TRAV41A0A0B4J266 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAV41A0A0B4J266 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.44■□□□□ 0.86
TRAV41A0A0B4J266 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms