Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 SLC7A5P1-201ENST00000568957 537 ntBASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
BLOC1S4Q9NUP1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 AC120498.10-201ENST00000621827 505 ntBASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
BLOC1S4Q9NUP1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
BLOC1S4Q9NUP1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.22■■□□□ 1.31
BLOC1S4Q9NUP1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 MYCNOS-205ENST00000641950 531 ntBASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 RBM17P2-201ENST00000616397 1405 ntBASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
BLOC1S4Q9NUP1 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
BLOC1S4Q9NUP1 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 PARP1-202ENST00000366792 553 ntTSL 3 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 UQCRFS1P1-201ENST00000435169 820 ntBASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
BLOC1S4Q9NUP1 AC121338.2-201ENST00000622535 1744 ntBASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms